Flavonoid & Folate – MyRiceBase

Search for putative flavonoid and folate SNPs based on SNPs ID, chromosome, alleles and pathways

Pathway :

SNP effect :

Chr :

Pathway	SNP ID	SNP effect	Gene ID	Gene description	Chr	Pos	Ref	Allele	Bali	PH9	MRM16	MRQ100	MR297	MRQ76
flavonoid	chr01_23457564	synonymous_variant	Os01g0597800	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	23457564	C	A	CC	CA	CC	CC	CC	CC
flavonoid	chr01_23457751	3_prime_UTR_variant	Os01g0597800	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	23457751	C	G	CC	CG	CC	CC	CC	CC
flavonoid	chr01_23457918	3_prime_UTR_variant	Os01g0597800	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	23457918	C	T	CC	CT	CC	CC	CC	CC
flavonoid	chr01_23464804	synonymous_variant	Os01g0598000	Similar to UDP-glycosyltransferase UGT703A5.	chr01	23464804	C	T	CC	CT	CC	CC	CC	CC
flavonoid	chr01_23465058	missense_variant	Os01g0598000	Similar to UDP-glycosyltransferase UGT703A5.	chr01	23465058	A	T	AA	AT	AA	AA	AA	AA
flavonoid	chr01_25383073	5_prime_UTR_variant	Os01g0633500	Similar to Dihydroflavonol reductase.	chr01	25383073	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr01_25383639	intron_variant	Os01g0633500	Similar to Dihydroflavonol reductase.	chr01	25383639	C	G	CG	CC	CC	CC	CC	CC
flavonoid	chr01_25384314	missense_variant	Os01g0633500	Similar to Dihydroflavonol reductase.	chr01	25384314	C	A	CC	CC	CC	CC	CC	CA
flavonoid	chr01_25384379	synonymous_variant	Os01g0633500	Similar to Dihydroflavonol reductase.	chr01	25384379	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr01_30667696	synonymous_variant	Os01g0735300	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	30667696	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr01_35637429	intron_variant	Os01g0832600	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr01	35637429	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr01_35637432	intron_variant	Os01g0832600	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr01	35637432	G	T	GG	GG	GG	GG	GG	GT
flavonoid	chr01_35637783	intron_variant	Os01g0832600	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr01	35637783	C	A	CC	CC	CC	CC	CC	CA
flavonoid	chr01_3918714	intron_variant	Os01g0176050	Hypothetical protein.	chr01	3918714	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr01_3918714	intron_variant	Os01g0176000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	3918714	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr01_3918989	intron_variant	Os01g0176000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	3918989	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr01_3918989	intron_variant	Os01g0176050	Hypothetical protein.	chr01	3918989	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr01_3919804	5_prime_UTR_variant	Os01g0176050	Hypothetical protein.	chr01	3919804	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr01_3919804	synonymous_variant	Os01g0176000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	3919804	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr01_3920003	missense_variant	Os01g0176000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	3920003	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr01_3920003	5_prime_UTR_variant	Os01g0176050	Hypothetical protein.	chr01	3920003	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr01_3920111	5_prime_UTR_variant	Os01g0176050	Hypothetical protein.	chr01	3920111	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr01_3920111	missense_variant	Os01g0176000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr01	3920111	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr01_39253383	synonymous_variant	Os01g0901500	Similar to 4-coumarate--CoA ligase-like 5.	chr01	39253383	G	A	GG	GG	GG	GA	GG	GG
flavonoid	chr01_39256032	intron_variant	Os01g0901550	Hypothetical gene.	chr01	39256032	G	C	GC	GG	GG	GG	GG	GG
flavonoid	chr01_39256032	intron_variant	Os01g0901500	Similar to 4-coumarate--CoA ligase-like 5.	chr01	39256032	G	C	GC	GG	GG	GG	GG	GG
flavonoid	chr01_39258240	synonymous_variant	Os01g0901600	Similar to 4-coumarate--CoA ligase-like 6.	chr01	39258240	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr01_39258803	missense_variant	Os01g0901600	Similar to 4-coumarate--CoA ligase-like 6.	chr01	39258803	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr01_39260539	intron_variant	Os01g0901650	Hypothetical gene.	chr01	39260539	C	A	CA	CC	CC	CC	CC	CC
flavonoid	chr01_39260539	intron_variant	Os01g0901600	Similar to 4-coumarate--CoA ligase-like 6.	chr01	39260539	C	A	CA	CC	CC	CC	CC	CC
folate	chr01_7667525	intron_variant	Os01g0238500	Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor.	chr01	7667525	T	G	TG	TG	TG	TG	TG	TG
folate	chr01_7667976	3_prime_UTR_variant	Os01g0238500	Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor.	chr01	7667976	T	C	TC	TC	TC	TC	TC	TC
flavonoid	chr02_12767696	intron_variant	Os02g0320300	Similar to Chalcone isomerase 3.	chr02	12767696	C	G	CC	CG	CC	CC	CC	CC
flavonoid	chr02_16678419	3_prime_UTR_variant	Os02g0483500	Transferase family protein.	chr02	16678419	A	T	AA	AA	AA	AA	AA	AT
flavonoid	chr02_16678835	missense_variant	Os02g0483500	Transferase family protein.	chr02	16678835	A	C	AA	AA	AA	AA	AA	AC
flavonoid	chr02_24988914	synonymous_variant	Os02g0626400	Similar to Phenylalanine ammonia-lyase.;Phenylalanine ammonia-lyase (EC 4.3.1.5).	chr02	24988914	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr02_25008770	synonymous_variant	Os02g0627100	Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5).	chr02	25008770	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr02_27907649	intron_variant	Os02g0682500	Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein).	chr02	27907649	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr02_28678322	intron_variant	Os02g0697400	4-coumarate:coenzyme A ligase, Flavonoid biosynthesis	chr02	28678322	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr02_32311178	intron_variant	Os02g0767300	Similar to Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS) (CitFLS).	chr02	32311178	C	A	CC	CC	CC	CC	CA	CC
flavonoid	chr02_32958017	intron_variant	Os02g0778500	Chalcone isomerase domain containing protein.	chr02	32958017	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr02_32958590	missense_variant	Os02g0778500	Chalcone isomerase domain containing protein.	chr02	32958590	G	A	GA	GG	GG	GG	GG	GG
folate	chr02_9950921	3_prime_UTR_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9950921	C	T	CC	CT	CC	CC	CC	CT
folate	chr02_9951113	3_prime_UTR_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9951113	G	A	GG	GG	GG	GG	GG	GA
folate	chr02_9951704	missense_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9951704	C	T	CT	CT	CC	CT	CT	CT
folate	chr02_9952002	missense_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9952002	T	A	TT	TT	TT	TA	TA	TT
folate	chr02_9952339	synonymous_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9952339	T	A	TT	TT	TT	TA	TA	TT
folate	chr02_9952583	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9952583	C	A	CC	CA	CC	CC	CC	CA
folate	chr02_9952945	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9952945	G	A	GG	GG	GG	GA	GA	GG
folate	chr02_9953220	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9953220	T	C	TT	TT	TC	TC	TC	TT
folate	chr02_9953370	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9953370	A	T	AA	AT	AA	AA	AA	AT
folate	chr02_9953807	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9953807	G	C	GG	GC	GG	GG	GG	GC
folate	chr02_9954371	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9954371	C	T	CC	CT	CC	CC	CC	CT
folate	chr02_9954675	intron_variant	Os02g0273100	Aminotransferase, class IV family protein.	chr02	9954675	A	G	AA	AA	AA	AG	AG	AA
flavonoid	chr03_10042510	intron_variant	Os03g0289800	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr03	10042510	T	A	TT	TT	TT	TA	TT	TT
flavonoid	chr03_10042774	intron_variant	Os03g0289800	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr03	10042774	C	G	CC	CC	CC	CG	CC	CC
flavonoid	chr03_34394898	intron_variant	Os03g0819600	Chalcone isomerase (EC 5.5.1.6).	chr03	34394898	T	C	TC	TT	TT	TT	TT	TT
flavonoid	chr03_34395506	missense_variant	Os03g0819600	Chalcone isomerase (EC 5.5.1.6).	chr03	34395506	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr03_4442342	intron_variant	Os03g0184550	Similar to Dihydroflavonol-4-reductase.	chr03	4442342	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr03_4442580	synonymous_variant	Os03g0184550	Similar to Dihydroflavonol-4-reductase.	chr03	4442580	C	A	CC	CC	CC	CC	CC	CA
flavonoid	chr03_4443004	intron_variant	Os03g0184550	Similar to Dihydroflavonol-4-reductase.	chr03	4443004	T	A	TT	TT	TT	TT	TT	TA
flavonoid	chr03_4443539	intron_variant	Os03g0184550	Similar to Dihydroflavonol-4-reductase.	chr03	4443539	G	T	GG	GG	GG	GG	GG	GT
flavonoid	chr03_4445205	intron_variant	Os03g0184600	Similar to Dihydroflavonol-4-reductase.	chr03	4445205	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr03_4445504	3_prime_UTR_variant	Os03g0184600	Similar to Dihydroflavonol-4-reductase.	chr03	4445504	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr03_4446256	3_prime_UTR_variant	Os03g0184600	Similar to Dihydroflavonol-4-reductase.	chr03	4446256	A	G	AA	AA	AA	AA	AA	AG
folate	chr03_641054	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	641054	A	G	AG	AG	AG	AG	AG	AG
folate	chr03_641444	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	641444	A	G	AG	AG	AG	AG	AG	AG
folate	chr03_641671	missense_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	641671	C	G	CG	CG	CG	CG	CG	CG
folate	chr03_642147	synonymous_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	642147	T	C	TC	TC	TC	TC	TC	TC
folate	chr03_643681	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	643681	A	G	AG	AG	AG	AG	AG	AG
folate	chr03_644143	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	644143	T	C	TC	TC	TC	TC	TC	TC
folate	chr03_644561	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	644561	T	G	TG	TG	TG	TG	TG	TG
folate	chr03_644732	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	644732	T	C	TC	TC	TC	TC	TC	TC
folate	chr03_645267	intron_variant	Os03g0111100	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr03	645267	A	G	AG	AG	AG	AG	AG	AG
flavonoid	chr04_261584	intron_variant	Os04g0103900	Similar to Chalcone synthase.	chr04	261584	C	T	CC	CT	CC	CC	CC	CC
flavonoid	chr04_262753	synonymous_variant	Os04g0103900	Similar to Chalcone synthase.	chr04	262753	T	C	TT	TC	TT	TT	TT	TT
flavonoid	chr04_27917649	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27917649	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr04_27919173	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27919173	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr04_27919836	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27919836	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr04_27921263	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27921263	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr04_27921779	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27921779	C	G	CC	CC	CC	CC	CC	CG
flavonoid	chr04_27921842	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27921842	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr04_27922041	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27922041	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr04_27923168	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27923168	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr04_27924251	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27924251	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr04_27929429	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27929429	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr04_27930982	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27930982	G	A	GG	GG	GG	GA	GG	GG
flavonoid	chr04_27932975	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27932975	G	T	GG	GG	GG	GT	GG	GG
flavonoid	chr04_27934034	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27934034	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr04_27935883	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27935883	G	T	GG	GG	GT	GG	GG	GG
flavonoid	chr04_27938398	intron_variant	Os04g0557500	Similar to Transcriptional activator Ra homolog (Fragment).	chr04	27938398	C	T	CC	CC	CC	CC	CT	CC
flavonoid	chr04_27950401	intron_variant	Os04g0557800	Similar to R-type basic helix-loop-helix protein.	chr04	27950401	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr04_27953839	intron_variant	Os04g0557800	Similar to R-type basic helix-loop-helix protein.	chr04	27953839	G	T	GG	GG	GG	GG	GT	GT
flavonoid	chr04_32087371	intron_variant	Os04g0630800	Similar to Anthocyanidin reductase.	chr04	32087371	A	G	AA	AA	AG	AA	AA	AA
flavonoid	chr04_32087780	missense_variant	Os04g0630800	Similar to Anthocyanidin reductase.	chr04	32087780	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr04_32087936	intron_variant	Os04g0630800	Similar to Anthocyanidin reductase.	chr04	32087936	C	G	CC	CG	CC	CC	CC	CC
folate	chr04_33814230	3_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33814230	G	A	GA	GA	GA	GA	GA	GA
folate	chr04_33814548	3_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33814548	G	A	GA	GA	GA	GA	GA	GA
folate	chr04_33814904	3_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33814904	G	A	GA	GA	GA	GA	GA	GA
folate	chr04_33814904	synonymous_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33814904	G	A	GA	GA	GA	GA	GA	GA
folate	chr04_33815486	synonymous_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33815486	A	G	AG	AG	AG	AG	AG	AG
folate	chr04_33815486	3_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33815486	A	G	AG	AG	AG	AG	AG	AG
folate	chr04_33815678	3_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33815678	T	C	TC	TC	TC	TC	TC	TC
folate	chr04_33815678	synonymous_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33815678	T	C	TC	TC	TC	TC	TC	TC
folate	chr04_33816380	intron_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33816380	A	G	AG	AG	AG	AG	AG	AG
folate	chr04_33817339	intron_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33817339	A	G	AG	AG	AG	AG	AG	AG
folate	chr04_33818710	5_prime_UTR_variant	Os04g0662700	Similar to GTP cyclohydrolase 1 isoform TaA.	chr04	33818710	T	A	TA	TA	TA	TA	TA	TA
flavonoid	chr04_7154268	intron_variant	Os04g0206500	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr04	7154268	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr04_7154553	intron_variant	Os04g0206500	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr04	7154553	G	A	GG	GG	GG	GA	GG	GG
flavonoid	chr04_7155179	synonymous_variant	Os04g0206500	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr04	7155179	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr04_7155887	synonymous_variant	Os04g0206500	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr04	7155887	G	T	GG	GG	GG	GT	GG	GG
flavonoid	chr05_14902924	intron_variant	Os05g0320700	Similar to Cytochrome P450.	chr05	14902924	T	A	TT	TT	TT	TT	TT	TA
flavonoid	chr05_14903362	intron_variant	Os05g0320700	Similar to Cytochrome P450.	chr05	14903362	A	G	AA	AG	AA	AA	AA	AA
flavonoid	chr05_14903366	intron_variant	Os05g0320700	Similar to Cytochrome P450.	chr05	14903366	C	T	CC	CC	CC	CC	CT	CC
flavonoid	chr05_1563129	intron_variant	Os05g0127500	Similar to Leucoanthocyanidin dioxygenase-like protein.	chr05	1563129	A	G	AA	AA	AA	AA	AG	AA
flavonoid	chr05_24607783	3_prime_UTR_variant	Os05g0499800	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr05	24607783	T	C	TT	TT	TT	TC	TT	TT
flavonoid	chr05_24611835	3_prime_UTR_variant	Os05g0500101	Hypothetical gene.	chr05	24611835	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr05_24611835	synonymous_variant	Os05g0500000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr05	24611835	C	T	CC	CC	CT	CC	CC	CC
folate	chr05_25654123	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25654123	C	T	CT	CT	CT	CT	CT	CT
folate	chr05_25654892	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25654892	C	G	CG	CG	CG	CG	CG	CG
folate	chr05_25655093	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25655093	T	C	TC	TC	TC	TC	TC	TC
folate	chr05_25655681	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25655681	C	T	CT	CT	CT	CT	CT	CT
folate	chr05_25656010	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25656010	C	T	CT	CT	CT	CT	CT	CT
folate	chr05_25656354	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25656354	C	T	CT	CT	CT	CT	CT	CT
folate	chr05_25656957	intron_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25656957	T	C	TC	TC	TC	TC	TC	TC
folate	chr05_25657433	synonymous_variant	Os05g0517500	Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase.	chr05	25657433	G	C	GC	GC	GC	GC	GC	GC
flavonoid	chr05_26199175	synonymous_variant	Os05g0527000	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr05	26199175	G	T	GT	GG	GG	GG	GG	GG
flavonoid	chr05_7153717	synonymous_variant	Os05g0215300	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr05	7153717	C	T	CC	CC	CT	CC	CC	CC
folate	chr05_8785994	intron_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8785994	G	T	GT	GT	GG	GG	GG	GT
folate	chr05_8786022	intron_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8786022	C	T	CC	CC	CC	CT	CC	CC
folate	chr05_8786295	missense_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8786295	G	C	GC	GC	GC	GC	GG	GC
folate	chr05_8786635	synonymous_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8786635	T	G	TT	TT	TG	TT	TT	TT
folate	chr05_8786968	intron_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8786968	C	T	CC	CC	CC	CT	CC	CC
folate	chr05_8787101	synonymous_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8787101	G	T	GG	GG	GG	GG	GG	GT
folate	chr05_8787142	missense_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8787142	G	A	GG	GA	GG	GG	GG	GG
folate	chr05_8787309	missense_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8787309	T	A	TA	TT	TA	TT	TT	TT
folate	chr05_8787487	5_prime_UTR_variant	Os05g0244700	Aminotransferase, class IV family protein.	chr05	8787487	T	C	TC	TC	TC	TC	TT	TC
flavonoid	chr06_10479460	synonymous_variant	Os06g0288300	C-glucosyltransferase, Flavone-C-glycoside synthesis	chr06	10479460	C	G	CG	CC	CC	CC	CC	CC
flavonoid	chr06_10479849	missense_variant	Os06g0288300	C-glucosyltransferase, Flavone-C-glycoside synthesis	chr06	10479849	A	G	AG	AA	AA	AA	AA	AA
flavonoid	chr06_10480582	synonymous_variant	Os06g0288300	C-glucosyltransferase, Flavone-C-glycoside synthesis	chr06	10480582	A	G	AG	AA	AA	AA	AA	AA
folate	chr06_2816508	missense_variant	Os06g0154600	Similar to Dihydroneopterin aldolase.	chr06	2816508	C	A	CA	CA	CA	CA	CA	CC
folate	chr06_2817049	synonymous_variant	Os06g0154600	Similar to Dihydroneopterin aldolase.	chr06	2817049	C	T	CT	CT	CT	CT	CT	CC
folate	chr06_29417486	missense_variant	Os06g0699700	Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.	chr06	29417486	C	T	CC	CC	CC	CT	CC	CC
folate	chr06_29417607	synonymous_variant	Os06g0699700	Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.	chr06	29417607	C	T	CT	CT	CT	CC	CT	CT
folate	chr06_29417986	synonymous_variant	Os06g0699700	Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.	chr06	29417986	T	C	TT	TT	TT	TT	TC	TT
folate	chr06_29418256	synonymous_variant	Os06g0699700	Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.	chr06	29418256	G	A	GA	GA	GA	GA	GA	GA
flavonoid	chr07_10018833	missense_variant	Os07g0271500	Similar to Chalcone synthase.	chr07	10018833	G	A	GG	GG	GG	GA	GG	GG
flavonoid	chr07_10019311	intron_variant	Os07g0271500	Similar to Chalcone synthase.	chr07	10019311	T	C	TT	TT	TT	TC	TT	TT
flavonoid	chr07_10637856	intron_variant	Os07g0280200	AMP-dependent synthetase and ligase domain containing protein.	chr07	10637856	T	G	TT	TT	TT	TG	TT	TT
flavonoid	chr07_10637856	intron_variant	Os07g0280600	Hypothetical protein.	chr07	10637856	T	G	TT	TT	TT	TG	TT	TT
flavonoid	chr07_18874068	3_prime_UTR_variant	Os07g0501100	Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).	chr07	18874068	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr07_18874382	missense_variant	Os07g0501133	Hypothetical gene.	chr07	18874382	T	G	TT	TT	TG	TT	TT	TT
flavonoid	chr07_18874382	synonymous_variant	Os07g0501100	Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).	chr07	18874382	T	G	TT	TT	TG	TT	TT	TT
flavonoid	chr07_18874697	missense_variant	Os07g0501133	Hypothetical gene.	chr07	18874697	C	G	CG	CC	CC	CC	CC	CC
flavonoid	chr07_18874697	synonymous_variant	Os07g0501100	Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).	chr07	18874697	C	G	CG	CC	CC	CC	CC	CC
flavonoid	chr07_18875570	synonymous_variant	Os07g0501100	Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).	chr07	18875570	C	G	CC	CC	CG	CC	CC	CC
flavonoid	chr07_20420936	synonymous_variant	Os07g0525500	Similar to chalcone synthase 8.	chr07	20420936	G	C	GG	GG	GC	GG	GG	GG
flavonoid	chr07_20420936	missense_variant	Os07g0525450	Hypothetical gene.	chr07	20420936	G	C	GG	GG	GC	GG	GG	GG
flavonoid	chr07_20421061	synonymous_variant	Os07g0525450	Hypothetical gene.	chr07	20421061	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr07_20421061	missense_variant	Os07g0525500	Similar to chalcone synthase 8.	chr07	20421061	C	T	CC	CC	CC	CT	CC	CC
folate	chr07_25524746	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25524746	A	G	AG	AG	AG	AG	AG	AG
folate	chr07_25525144	synonymous_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25525144	G	C	GC	GC	GC	GC	GC	GC
folate	chr07_25526281	synonymous_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25526281	G	T	GG	GG	GT	GG	GG	GG
folate	chr07_25526474	missense_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25526474	A	G	AG	AG	AG	AA	AG	AG
folate	chr07_25526902	3_prime_UTR_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25526902	C	T	CT	CT	CT	CT	CT	CT
folate	chr07_25527444	3_prime_UTR_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25527444	T	C	TC	TC	TC	TT	TC	TC
folate	chr07_25527596	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25527596	T	A	TA	TA	TA	TA	TA	TA
folate	chr07_25528376	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25528376	A	G	AG	AG	AG	AG	AG	AG
folate	chr07_25528623	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25528623	G	A	GA	GA	GA	GA	GA	GA
folate	chr07_25529004	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25529004	G	T	GT	GT	GT	GG	GT	GT
folate	chr07_25529116	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25529116	A	T	AA	AA	AA	AT	AA	AA
folate	chr07_25529632	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25529632	C	G	CC	CC	CC	CG	CC	CC
folate	chr07_25529664	intron_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25529664	G	A	GA	GA	GA	GG	GA	GA
folate	chr07_25530235	3_prime_UTR_variant	Os07g0618500	Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).	chr07	25530235	T	C	TC	TC	TC	TT	TC	TC
flavonoid	chr08_2382531	missense_variant	Os08g0143300	AMP-dependent synthetase and ligase domain containing protein.	chr08	2382531	C	G	CC	CC	CC	CC	CG	CC
flavonoid	chr08_25592457	missense_variant	Os08g0515900	Similar to Dihydroflavonol-4-reductase.	chr08	25592457	G	T	GG	GG	GG	GG	GT	GG
folate	chr08_27833422	intron_variant	Os08g0556200	Similar to Dihydroneopterin aldolase.	chr08	27833422	C	T	CT	CT	CT	CT	CT	CT
folate	chr08_27833716	intron_variant	Os08g0556200	Similar to Dihydroneopterin aldolase.	chr08	27833716	A	G	AG	AG	AG	AG	AG	AG
folate	chr08_27834093	3_prime_UTR_variant	Os08g0556200	Similar to Dihydroneopterin aldolase.	chr08	27834093	A	G	AG	AG	AG	AG	AG	AG
flavonoid	chr08_4898080	3_prime_UTR_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898080	T	C	TC	TT	TT	TT	TT	TT
flavonoid	chr08_4898415	3_prime_UTR_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898415	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr08_4898790	3_prime_UTR_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898790	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr08_4898859	3_prime_UTR_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898859	A	T	AA	AA	AT	AA	AA	AA
flavonoid	chr08_4898933	synonymous_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898933	G	C/A	GC	GC	GG	GC	GA	GG
flavonoid	chr08_4898933	missense_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4898933	G	C/A	GC	GC	GG	GC	GA	GG
flavonoid	chr08_4900194	missense_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4900194	G	C	GG	GG	GC	GG	GG	GG
flavonoid	chr08_4900215	missense_variant	Os08g0183900	Similar to dihydroflavonol-4-reductase.	chr08	4900215	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr08_8874784	missense_variant	Os08g0245301	Hypothetical gene.	chr08	8874784	T	G	TT	TT	TT	TT	TT	TG
flavonoid	chr08_8874784	missense_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8874784	T	G	TT	TT	TT	TT	TT	TG
flavonoid	chr08_8877016	intron_variant	Os08g0245301	Hypothetical gene.	chr08	8877016	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr08_8877016	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8877016	G	A	GG	GG	GG	GG	GG	GA
flavonoid	chr08_8877334	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8877334	T	G	TT	TT	TT	TT	TT	TG
flavonoid	chr08_8877334	intron_variant	Os08g0245301	Hypothetical gene.	chr08	8877334	T	G	TT	TT	TT	TT	TT	TG
flavonoid	chr08_8877543	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8877543	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr08_8877543	intron_variant	Os08g0245301	Hypothetical gene.	chr08	8877543	C	T	CC	CC	CT	CC	CC	CC
flavonoid	chr08_8877857	5_prime_UTR_variant	Os08g0245301	Hypothetical gene.	chr08	8877857	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr08_8877857	missense_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8877857	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr08_8878091	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878091	A	T	AA	AA	AA	AT	AA	AA
flavonoid	chr08_8878117	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878117	A	G	AA	AA	AA	AA	AA	AG
flavonoid	chr08_8878252	missense_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878252	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr08_8878321	intron_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878321	G	T	GT	GG	GG	GG	GG	GG
flavonoid	chr08_8878593	3_prime_UTR_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878593	C	G	CC	CC	CC	CC	CC	CG
flavonoid	chr08_8878672	3_prime_UTR_variant	Os08g0245200	4-coumarate:coenzyme A ligase, Lignin biosynthesis	chr08	8878672	A	C	AA	AC	AA	AA	AA	AA
flavonoid	chr09_11289403	intron_variant	Os09g0353400	Similar to Leucoanthocyanidin dioxygenase.	chr09	11289403	C	G	CC	CC	CC	CG	CC	CC
flavonoid	chr09_11289532	intron_variant	Os09g0353400	Similar to Leucoanthocyanidin dioxygenase.	chr09	11289532	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr09_11291058	3_prime_UTR_variant	Os09g0353400	Similar to Leucoanthocyanidin dioxygenase.	chr09	11291058	A	C	AA	AA	AC	AA	AA	AA
flavonoid	chr09_11309538	intron_variant	Os09g0353700	Similar to Leucoanthocyanidin dioxygenase.	chr09	11309538	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr09_11320623	intron_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11320623	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr09_11321557	intron_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11321557	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr09_11321796	intron_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11321796	T	G	TT	TT	TT	TT	TT	TG
flavonoid	chr09_11321887	intron_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11321887	G	A	GG	GG	GA	GG	GG	GG
flavonoid	chr09_11322053	intron_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11322053	G	A	GA	GG	GG	GG	GG	GG
flavonoid	chr09_11322892	missense_variant	Os09g0354100	Similar to Leucoanthocyanidin dioxygenase.	chr09	11322892	C	A	CC	CC	CA	CC	CC	CC
flavonoid	chr09_19012056	3_prime_UTR_variant	Os09g0491820	Similar to dihydroflavonol-4-reductase.;NAD(P)-binding domain containing protein.	chr09	19012056	A	G	AA	AA	AG	AA	AA	AA
flavonoid	chr09_19012056	missense_variant	Os09g0491820	Similar to dihydroflavonol-4-reductase.;NAD(P)-binding domain containing protein.	chr09	19012056	A	G	AA	AA	AG	AA	AA	AA
folate	chr09_21923522	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21923522	C	T	CT	CC	CT	CC	CT	CT
folate	chr09_21924356	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21924356	C	T	CT	CC	CT	CC	CT	CT
folate	chr09_21924441	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21924441	T	C	TT	TC	TT	TC	TT	TT
folate	chr09_21924576	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21924576	T	C	TC	TT	TC	TT	TC	TC
folate	chr09_21925229	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21925229	A	G	AA	AA	AG	AA	AA	AA
folate	chr09_21925482	intron_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21925482	A	G	AG	AA	AG	AA	AG	AG
folate	chr09_21925883	synonymous_variant	Os09g0553300	NUDIX hydrolase domain containing protein.	chr09	21925883	C	A	CC	CC	CA	CC	CC	CC
folate	chr09_22273266	intron_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22273266	G	A	GA	GG	GG	GG	GG	GG
folate	chr09_22273270	intron_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22273270	G	C	GG	GG	GG	GG	GG	GC
folate	chr09_22274040	missense_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22274040	A	G	AG	AA	AG	AA	AG	AG
folate	chr09_22274263	intron_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22274263	A	G	AG	AA	AA	AA	AA	AG
folate	chr09_22274617	missense_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22274617	G	A	GG	GG	GA	GG	GA	GG
folate	chr09_22274644	missense_variant	Os09g0560500	Dihydroneopterin aldolase family protein.	chr09	22274644	G	A	GA	GG	GG	GG	GG	GA
folate	chr10_19201609	3_prime_UTR_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19201609	T	C	TC	TC	TC	TC	TC	TC
folate	chr10_19202433	3_prime_UTR_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19202433	C	T	CT	CT	CT	CT	CT	CT
folate	chr10_19202433	synonymous_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19202433	C	T	CT	CT	CT	CT	CT	CT
folate	chr10_19202612	intron_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19202612	T	C	TT	TT	TC	TT	TT	TT
folate	chr10_19202618	intron_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19202618	T	G	TG	TG	TT	TG	TG	TG
folate	chr10_19203519	3_prime_UTR_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19203519	A	G	AG	AG	AG	AG	AG	AG
folate	chr10_19203519	synonymous_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19203519	A	G	AG	AG	AG	AG	AG	AG
folate	chr10_19204327	intron_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19204327	C	A	CA	CA	CA	CA	CA	CA
folate	chr10_19205367	intron_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19205367	C	A	CA	CA	CA	CA	CA	CA
folate	chr10_19205680	intron_variant	Os10g0503200	Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.	chr10	19205680	T	G	TT	TT	TG	TT	TT	TT
flavonoid	chr10_22020782	intron_variant	Os10g0559450	Conserved hypothetical protein.	chr10	22020782	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr10_22020782	synonymous_variant	Os10g0559550	Conserved hypothetical protein.	chr10	22020782	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr10_22020782	3_prime_UTR_variant	Os10g0559500	2OG-Fe(II) oxygenase domain containing protein.	chr10	22020782	T	C	TT	TT	TC	TT	TT	TT
flavonoid	chr10_8496533	intron_variant	Os10g0317900	Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript.	chr10	8496533	C	A	CC	CC	CC	CA	CC	CC
flavonoid	chr10_8498301	intron_variant	Os10g0317900	Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript.	chr10	8498301	A	G	AA	AA	AA	AG	AA	AA
flavonoid	chr10_8501236	intron_variant	Os10g0317900	Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript.	chr10	8501236	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr11_14672977	3_prime_UTR_variant	Os11g0444000	Similar to UDP-glucosyltransferase BX8.	chr11	14672977	A	T	AA	AT	AA	AA	AA	AA
folate	chr11_17054274	5_prime_UTR_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17054274	C	T	CT	CC	CC	CC	CT	CT
folate	chr11_17054614	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17054614	A	G	AA	AA	AA	AG	AA	AA
folate	chr11_17055071	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17055071	A	T	AT	AA	AA	AA	AT	AT
folate	chr11_17055551	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17055551	G	A	GG	GA	GA	GG	GG	GG
folate	chr11_17055581	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17055581	A	G	AA	AA	AA	AG	AA	AA
folate	chr11_17055643	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17055643	T	C	TC	TT	TT	TT	TC	TC
folate	chr11_17055837	missense_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17055837	G	A	GA	GG	GG	GG	GA	GA
folate	chr11_17056268	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17056268	G	A	GG	GA	GA	GA	GG	GG
folate	chr11_17056621	missense_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17056621	G	A	GG	GA	GA	GG	GG	GG
folate	chr11_17056789	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17056789	C	T	CT	CT	CT	CT	CT	CT
folate	chr11_17057327	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17057327	T	G	TG	TG	TG	TG	TG	TG
folate	chr11_17057606	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17057606	G	T	GG	GG	GG	GT	GG	GG
folate	chr11_17057815	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17057815	G	A	GG	GA	GA	GG	GG	GG
folate	chr11_17058610	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17058610	C	G	CC	CG	CG	CC	CC	CC
folate	chr11_17059755	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17059755	A	G	AG	AG	AG	AG	AG	AG
folate	chr11_17060045	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17060045	C	A	CA	CC	CA	CC	CA	CA
folate	chr11_17060095	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17060095	A	T	AA	AT	AA	AT	AA	AA
folate	chr11_17060688	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17060688	A	G	AA	AG	AG	AG	AA	AA
folate	chr11_17060810	intron_variant	Os11g0484400	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	17060810	T	G	TG	TT	TT	TT	TG	TG
flavonoid	chr11_19277598	3_prime_UTR_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19277598	G	A	GG	GA	GG	GG	GG	GG
flavonoid	chr11_19277885	3_prime_UTR_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19277885	A	G	AA	AA	AA	AG	AA	AA
flavonoid	chr11_19279512	intron_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19279512	C	T	CC	CC	CC	CT	CC	CC
flavonoid	chr11_19280030	intron_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280030	T	C	TT	TT	TT	TT	TT	TC
flavonoid	chr11_19280040	intron_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280040	T	G	TT	TT	TT	TG	TT	TT
flavonoid	chr11_19280523	intron_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280523	T	C	TT	TC	TT	TT	TT	TT
flavonoid	chr11_19280781	synonymous_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280781	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr11_19280813	missense_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280813	C	T	CT	CC	CC	CC	CC	CC
flavonoid	chr11_19280957	5_prime_UTR_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19280957	G	A	GG	GA	GG	GG	GG	GG
flavonoid	chr11_19281003	5_prime_UTR_variant	Os11g0530600	Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2).	chr11	19281003	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr11_22927285	missense_variant	Os11g0599200	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr11	22927285	C	T	CC	CC	CC	CC	CC	CT
flavonoid	chr11_22927976	5_prime_UTR_variant	Os11g0599200	UDP-glucuronosyl/UDP-glucosyltransferase family protein.	chr11	22927976	G	A	GG	GG	GG	GG	GG	GA
folate	chr11_23922548	5_prime_UTR_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922548	G	A	GG	GG	GG	GG	GG	GA
folate	chr11_23922669	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922669	C	A	CA	CC	CC	CA	CC	CC
folate	chr11_23922742	synonymous_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922742	C	T	CC	CC	CC	CC	CC	CT
folate	chr11_23922806	missense_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922806	T	A	TT	TA	TT	TT	TT	TT
folate	chr11_23922887	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922887	A	T	AA	AA	AT	AA	AT	AA
folate	chr11_23922892	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23922892	A	T	AT	AA	AA	AT	AA	AA
folate	chr11_23923117	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23923117	T	A	TA	TT	TT	TT	TT	TT
folate	chr11_23923209	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23923209	C	T	CC	CC	CC	CT	CC	CC
folate	chr11_23923412	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23923412	G	A	GG	GG	GA	GG	GA	GG
folate	chr11_23923418	intron_variant	Os11g0615250	Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.	chr11	23923418	A	G	AA	AG	AA	AA	AA	AG
flavonoid	chr11_732174	intron_variant	Os11g0116300	Chalcone isomerase domain containing protein.	chr11	732174	G	A	GG	GG	GG	GG	GG	GA
folate	chr12_15130974	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15130974	C	A	CA	CA	CA	CC	CA	CA
folate	chr12_15131238	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15131238	A	T	AA	AA	AA	AT	AA	AA
folate	chr12_15131517	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15131517	C	T	CT	CT	CT	CC	CT	CT
folate	chr12_15131669	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15131669	G	T	GT	GT	GT	GG	GT	GT
folate	chr12_15131694	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15131694	G	A	GG	GG	GG	GA	GG	GG
folate	chr12_15131924	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15131924	G	A	GG	GG	GG	GA	GG	GA
folate	chr12_15132005	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15132005	A	G	AG	AA	AA	AA	AA	AA
folate	chr12_15132460	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15132460	C	T	CT	CT	CT	CC	CT	CT
folate	chr12_15132878	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15132878	T	C	TC	TC	TC	TT	TC	TC
folate	chr12_15132907	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15132907	C	T	CC	CC	CC	CT	CC	CC
folate	chr12_15133107	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133107	C	T	CC	CC	CC	CT	CC	CT
folate	chr12_15133111	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133111	T	C	TC	TC	TC	TT	TC	TT
folate	chr12_15133431	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133431	C	T	CT	CT	CT	CC	CT	CT
folate	chr12_15133454	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133454	T	C	TT	TT	TT	TC	TT	TT
folate	chr12_15133797	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133797	C	T	CT	CT	CT	CC	CT	CT
folate	chr12_15133807	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15133807	A	G	AA	AA	AA	AG	AA	AA
folate	chr12_15134595	synonymous_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15134595	T	C	TT	TT	TC	TC	TT	TT
folate	chr12_15135249	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15135249	C	G	CC	CC	CC	CG	CC	CC
folate	chr12_15135972	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15135972	A	C	AC	AC	AC	AA	AC	AC
folate	chr12_15136166	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15136166	A	T	AT	AT	AT	AT	AT	AT
folate	chr12_15137007	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15137007	T	C	TC	TC	TC	TC	TC	TC
folate	chr12_15137232	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15137232	G	A	GA	GA	GA	GG	GA	GA
folate	chr12_15137384	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15137384	C	A	CA	CA	CA	CC	CA	CA
folate	chr12_15138358	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15138358	G	T	GG	GG	GT	GT	GG	GG
folate	chr12_15138951	intron_variant	Os12g0446900	Similar to bifunctional dihydrofolate reductase-thymidylate synthase.	chr12	15138951	C	G	CG	CG	CG	CC	CG	CG
folate	chr12_26636096	synonymous_variant	Os12g0623800	Similar to GLA1.	chr12	26636096	A	G	AG	AG	AG	AG	AG	AG
folate	chr12_26636488	intron_variant	Os12g0623800	Similar to GLA1.	chr12	26636488	T	C	TC	TC	TC	TC	TC	TC
Pathway		SNP effect			Chr