Flavonoid & Folate Exp

Search for flavonoid and folate SNPs based on SNPs ID, chromosomes and pathways

Pathway :

SNPs effect :

Chr :

Pathway	Gene identifier	Gene name	SNPs effect	SNP ID	Ref	Allele	Chr	Pos	Bali	PH9	MRM 16	MRQ 100	MR 297	MRQ 76
flavonoid	Os01g0597800	UGT	synonymous_variant	chr01_23456391	G	A	chr01	23,456,391	GG	GG	GG	GG	GA	GG
flavonoid	Os01g0597800	UGT	missense_variant	chr01_23456938	T	G	chr01	23,456,938	TG	TT	TT	TT	TT	TT
flavonoid	Os01g0597800	UGT	synonymous_variant	chr01_23456970	C	G	chr01	23,456,970	CC	CG	CC	CC	CG	CG
flavonoid	Os01g0597800	UGT	synonymous_variant	chr01_23457564	C	A	chr01	23,457,564	CA	CC	CC	CC	CC	CC
flavonoid	Os01g0633500	DFR	synonymous_variant	chr01_25384027	C	T	chr01	25,384,027	CT	CC	CC	CC	CC	CC
flavonoid	Os01g0633500	DFR	3_prime_UTR_variant	chr01_25384489	T	G	chr01	25,384,489	TG	TG	TT	TT	TT	TT
flavonoid	Os01g0638000	UGT	missense_variant	chr01_25599180	T	A	chr01	25,599,180	TA	TA	TT	TT	TT	TT
flavonoid	Os01g0638000	UGT	missense_variant	chr01_25599354	G	C	chr01	25,599,354	GC	GC	GG	GG	GC	GG
flavonoid	Os01g0734600	UGT	synonymous_variant	chr01_30647835	G	A	chr01	30,647,835	GA	GA	GA	GA	GA	GA
flavonoid	Os01g0734600	UGT	synonymous_variant	chr01_30648216	G	A	chr01	30,648,216	GA	GA	GA	GA	GA	GA
flavonoid	Os01g0734600	UGT	missense_variant	chr01_30648635	C	A	chr01	30,648,635	CA	CA	CA	CA	CA	CA
flavonoid	Os01g0734600	UGT	3_prime_UTR_variant	chr01_30649201	T	G	chr01	30,649,201	TG	TG	TG	TG	TG	TG
flavonoid	Os01g0736100	UGT	3_prime_UTR_variant	chr01_30695151	A	G	chr01	30,695,151	AG	AA	AA	AA	AA	AA
flavonoid	Os01g0736100	UGT	missense_variant	chr01_30695299	T	C	chr01	30,695,299	TT	TC	TC	TT	TC	TT
flavonoid	Os01g0736100	UGT	missense_variant	chr01_30695668	A	G	chr01	30,695,668	AG	AG	AA	AA	AA	AA
flavonoid	Os01g0736100	UGT	missense_variant	chr01_30695837	C	G	chr01	30,695,837	CC	CC	CC	CC	CG	CC
flavonoid	Os01g0736100	UGT	synonymous_variant	chr01_30696293	A	G	chr01	30,696,293	AA	AG	AA	AA	AA	AA
flavonoid	Os01g0736100	UGT	missense_variant	chr01_30696421	G	A	chr01	30,696,421	GA	GG	GG	GG	GG	GG
flavonoid	Os01g0736100	UGT	synonymous_variant	chr01_30696524	A	G	chr01	30,696,524	AA	AA	AA	AG	AG	AA
flavonoid	Os01g0736300	UGT	synonymous_variant	chr01_30712820	A	G	chr01	30,712,820	AG	AG	AG	AG	AG	AG
flavonoid	Os01g0736300	UGT	synonymous_variant	chr01_30713192	C	G	chr01	30,713,192	CG	CC	CC	CC	CG	CC
flavonoid	Os01g0736300	UGT	missense_variant	chr01_30713299	T	C	chr01	30,713,299	TT	TC	TC	TT	TT	TT
flavonoid	Os01g0736300	UGT	synonymous_variant	chr01_30713363	T	G	chr01	30,713,363	TT	TT	TT	TG	TT	TT
flavonoid	Os01g0736300	UGT	missense_variant	chr01_30713739	T	C	chr01	30,713,739	TC	TC	TC	TT	TC	TC
flavonoid	Os01g0820000	C4H	3_prime_UTR_variant	chr01_34962215	T	G	chr01	34,962,215	TG	TG	TT	TT	TG	TT
flavonoid	Os01g0820000	C4H	3_prime_UTR_variant	chr01_34962399	G	C	chr01	34,962,399	GC	GC	GG	GG	GC	GG
flavonoid	Os01g0820000	C4H	intron_variant	chr01_34962630	T	G	chr01	34,962,630	TT	TG	TT	TT	TT	TT
flavonoid	Os01g0820000	C4H	missense_variant	chr01_34963117	C	T	chr01	34,963,117	CT	CT	CC	CC	CC	CC
flavonoid	Os01g0176000	UGT	missense_variant	chr01_3920097	A	T	chr01	3,920,097	AA	AT	AA	AT	AT	AA
flavonoid	Os01g0176000	UGT	missense_variant	chr01_3920111	A	G	chr01	3,920,111	AA	AA	AA	AA	AA	AG
flavonoid	Os01g0176000	UGT	synonymous_variant	chr01_3920260	A	G	chr01	3,920,260	AA	AA	AA	AA	AG	AA
flavonoid	Os01g0901500	4CL	synonymous_variant	chr01_39253041	C	T	chr01	39,253,041	CT	CT	CT	CT	CT	CT
flavonoid	Os01g0901500	4CL	synonymous_variant	chr01_39253383	G	A	chr01	39,253,383	GG	GG	GG	GA	GG	GG
flavonoid	Os01g0901500	4CL	missense_variant	chr01_39253487	A	G	chr01	39,253,487	AG	AG	AG	AA	AG	AA
flavonoid	Os01g0901500	4CL	synonymous_variant	chr01_39253587	A	G	chr01	39,253,587	AA	AA	AA	AG	AA	AG
flavonoid	Os01g0901500	4CL	synonymous_variant	chr01_39254016	C	T	chr01	39,254,016	CT	CT	CT	CT	CT	CC
flavonoid	Os01g0901500	4CL	synonymous_variant	chr01_39254372	C	T	chr01	39,254,372	CT	CT	CT	CT	CT	CT
flavonoid	Os01g0901500	4CL	intron_variant	chr01_39255482	C	T	chr01	39,255,482	CT	CT	CT	CC	CT	CT
flavonoid	Os01g0901500	4CL	3_prime_UTR_variant	chr01_39256396	A	G	chr01	39,256,396	AA	AA	AA	AG	AA	AA
flavonoid	Os01g0901500	4CL	3_prime_UTR_variant	chr01_39256445	T	A	chr01	39,256,445	TA	TA	TA	TT	TA	TA
flavonoid	Os01g0901500	4CL	3_prime_UTR_variant	chr01_39256552	G	T	chr01	39,256,552	GG	GG	GG	GT	GG	GG
folate	Os01g0238500	ADCL	intron_variant	chr01_7667525	T	G	chr01	7,667,525	TT	TT	TT	TT	TG	TT
folate	Os01g0238500	ADCL	3_prime_UTR_variant	chr01_7667976	T	C	chr01	7,667,976	TC	TC	TC	TC	TC	TC
flavonoid	Os02g0320300	CHI	missense_variant	chr02_12765459	G	T	chr02	12,765,459	GG	GT	GG	GG	GT	GT
flavonoid	Os02g0467600	C4H	5_prime_UTR_variant	chr02_15734903	A	T	chr02	15,734,903	AA	AA	AT	AA	AT	AT
flavonoid	Os02g0467600	C4H	synonymous_variant	chr02_15735045	A	G	chr02	15,735,045	AA	AG	AA	AA	AA	AA
flavonoid	Os02g0467600	C4H	synonymous_variant	chr02_15735108	G	A	chr02	15,735,108	GA	GG	GA	GG	GG	GG
flavonoid	Os02g0467600	C4H	synonymous_variant	chr02_15735429	G	T	chr02	15,735,429	GG	GG	GG	GG	GT	GT
flavonoid	Os02g0467600	C4H	synonymous_variant	chr02_15736028	G	A	chr02	15,736,028	GG	GA	GA	GG	GA	GA
flavonoid	Os02g0467600	C4H	3_prime_UTR_variant	chr02_15736704	T	C	chr02	15,736,704	TC	TC	TC	TC	TC	TC
flavonoid	Os02g0483500	UGT	3_prime_UTR_variant	chr02_16678419	A	T	chr02	16,678,419	AA	AA	AA	AA	AA	AT
flavonoid	Os02g0483500	UGT	3_prime_UTR_variant	chr02_16678471	G	A	chr02	16,678,471	GA	GG	GA	GG	GG	GG
flavonoid	Os02g0483500	UGT	missense_variant	chr02_16678835	A	C	chr02	16,678,835	AA	AA	AA	AA	AA	AC
flavonoid	Os02g0483500	UGT	synonymous_variant	chr02_16679044	G	A	chr02	16,679,044	GA	GA	GA	GG	GA	GG
flavonoid	Os02g0483500	UGT	missense_variant	chr02_16679121	T	C	chr02	16,679,121	TT	TT	TT	TT	TT	TC
flavonoid	Os02g0483500	UGT	missense_variant	chr02_16679715	C	A	chr02	16,679,715	CA	CA	CA	CC	CA	CA
flavonoid	Os02g0483500	UGT	missense_variant	chr02_16679868	C	T	chr02	16,679,868	CT	CT	CT	CC	CC	CC
flavonoid	Os02g0483500	UGT	missense_variant	chr02_16679870	A	C	chr02	16,679,870	AA	AA	AA	AA	AC	AC
flavonoid	Os02g0589400	UGT	missense_variant	chr02_22742146	C	T	chr02	22,742,146	CC	CC	CC	CC	CT	CC
flavonoid	Os02g0589400	UGT	missense_variant	chr02_22742742	G	A	chr02	22,742,742	GG	GG	GA	GG	GG	GG
flavonoid	Os02g0589400	UGT	missense_variant	chr02_22742785	C	T	chr02	22,742,785	CC	CC	CC	CT	CT	CC
flavonoid	Os02g0589400	UGT	missense_variant	chr02_22743085	C	T	chr02	22,743,085	CC	CC	CT	CT	CT	CC
flavonoid	Os02g0626400	PAL	3_prime_UTR_variant	chr02_24985480	C	T	chr02	24,985,480	CT	CT	CT	CT	CT	CT
flavonoid	Os02g0626400	PAL	synonymous_variant	chr02_24985765	G	A	chr02	24,985,765	GA	GA	GG	GA	GA	GG
flavonoid	Os02g0626400	PAL	synonymous_variant	chr02_24986170	T	C	chr02	24,986,170	TC	TC	TC	TC	TC	TC
flavonoid	Os02g0626400	PAL	synonymous_variant	chr02_24986947	A	C	chr02	24,986,947	AC	AC	AC	AC	AC	AC
flavonoid	Os02g0626400	PAL	intron_variant	chr02_24987604	G	C	chr02	24,987,604	GG	GC	GG	GG	GG	GG
flavonoid	Os02g0626400	PAL	intron_variant	chr02_24987875	A	T	chr02	24,987,875	AA	AT	AA	AA	AA	AA
flavonoid	Os02g0626400	PAL	intron_variant	chr02_24988193	G	C	chr02	24,988,193	GG	GG	GC	GG	GG	GG
flavonoid	Os02g0626400	PAL	intron_variant	chr02_24988596	G	A	chr02	24,988,596	GG	GG	GG	GG	GG	GA
flavonoid	Os02g0626400	PAL	synonymous_variant	chr02_24988914	G	A	chr02	24,988,914	GG	GG	GG	GG	GG	GA
flavonoid	Os02g0626400	PAL	synonymous_variant	chr02_24989160	G	A	chr02	24,989,160	GA	GA	GA	GA	GA	GA
flavonoid	Os02g0626600	PAL	missense_variant	chr02_24993700	T	G	chr02	24,993,700	TT	TT	TT	TT	TG	TG
flavonoid	Os02g0626600	PAL	synonymous_variant	chr02_24994495	A	G	chr02	24,994,495	AA	AA	AA	AA	AA	AG
flavonoid	Os02g0626600	PAL	synonymous_variant	chr02_24994681	A	C	chr02	24,994,681	AC	AA	AA	AA	AA	AC
flavonoid	Os02g0626600	PAL	intron_variant	chr02_24995107	T	C	chr02	24,995,107	TT	TT	TT	TT	TC	TC
flavonoid	Os02g0682500	WD40	synonymous_variant	chr02_27908819	C	A	chr02	27,908,819	CC	CC	CA	CA	CA	CC
flavonoid	Os02g0682500	WD40	missense_variant	chr02_27909106	T	C	chr02	27,909,106	TT	TT	TT	TT	TT	TC
flavonoid	Os02g0682500	WD40	5_prime_UTR_variant	chr02_27909295	G	A	chr02	27,909,295	GG	GG	GG	GA	GG	GG
flavonoid	Os02g0767300	FLS	synonymous_variant	chr02_32311846	A	G	chr02	32,311,846	AA	AA	AA	AA	AG	AA
flavonoid	Os02g0778500	CHI	missense_variant	chr02_32958890	G	A	chr02	32,958,890	GG	GA	GA	GG	GA	GA
flavonoid	Os02g0177600	4CL	synonymous_variant	chr02_4280775	G	T	chr02	4,280,775	GT	GT	GT	GT	GT	GT
flavonoid	Os02g0177600	4CL	synonymous_variant	chr02_4282288	T	G	chr02	4,282,288	TG	TG	TT	TG	TG	TG
flavonoid	Os02g0177600	4CL	3_prime_UTR_variant	chr02_4285826	A	T	chr02	4,285,826	AA	AA	AA	AT	AT	AT
folate	Os02g0273100	ADCL	3_prime_UTR_variant	chr02_9950921	C	T	chr02	9,950,921	CT	CT	CC	CC	CC	CC
folate	Os02g0273100	ADCL	3_prime_UTR_variant	chr02_9951113	G	A	chr02	9,951,113	GG	GG	GG	GG	GG	GA
folate	Os02g0273100	ADCL	missense_variant	chr02_9951704	C	T	chr02	9,951,704	CC	CT	CC	CT	CT	CC
folate	Os02g0273100	ADCL	missense_variant	chr02_9952002	T	A	chr02	9,952,002	TT	TT	TT	TA	TA	TT
folate	Os02g0273100	ADCL	synonymous_variant	chr02_9952339	T	A	chr02	9,952,339	TT	TT	TT	TA	TA	TT
flavonoid	Os03g0289800	LAR	synonymous_variant	chr03_10043247	A	G	chr03	10,043,247	AA	AA	AA	AA	AA	AG
flavonoid	Os03g0289800	LAR	missense_variant	chr03_10043426	C	T	chr03	10,043,426	CT	CT	CC	CC	CT	CT
flavonoid	Os03g0122300	F3H	3_prime_UTR_variant	chr03_1235465	G	C	chr03	1,235,465	GG	GG	GG	GG	GG	GC
flavonoid	Os03g0122300	F3H	synonymous_variant	chr03_1235868	T	C	chr03	1,235,868	TC	TC	TC	TT	TC	TC
flavonoid	Os03g0122300	F3H	missense_variant	chr03_1244354	G	T	chr03	1,244,354	GT	GT	GG	GG	GG	GT
flavonoid	Os03g0184550	DFR	5_prime_UTR_variant	chr03_4442017	G	C	chr03	4,442,017	GC	GC	GG	GG	GC	GG
flavonoid	Os03g0184550	DFR	synonymous_variant	chr03_4442148	G	C	chr03	4,442,148	GG	GG	GG	GC	GG	GG
flavonoid	Os03g0184550	DFR	synonymous_variant	chr03_4442580	C	A	chr03	4,442,580	CC	CC	CC	CC	CC	CA
flavonoid	Os03g0184550	DFR	missense_variant	chr03_4443321	T	G	chr03	4,443,321	TG	TG	TT	TG	TG	TT
flavonoid	Os03g0184600	DFR	synonymous_variant	chr03_4444172	C	T	chr03	4,444,172	CC	CC	CC	CC	CT	CC
flavonoid	Os03g0184600	DFR	intron_variant	chr03_4445202	G	T	chr03	4,445,202	GG	GT	GG	GG	GG	GG
flavonoid	Os03g0184600	DFR	3_prime_UTR_variant	chr03_4445504	G	A	chr03	4,445,504	GG	GG	GG	GG	GG	GA
flavonoid	Os03g0184600	DFR	3_prime_UTR_variant	chr03_4445571	G	C	chr03	4,445,571	GC	GC	GC	GC	GC	GG
flavonoid	Os03g0184600	DFR	3_prime_UTR_variant	chr03_4446256	A	G	chr03	4,446,256	AA	AA	AA	AA	AA	AG
folate	Os03g0111100	FPGS	missense_variant	chr03_641671	C	G	chr03	641,671	CG	CG	CG	CG	CG	CG
folate	Os03g0111100	FPGS	synonymous_variant	chr03_642147	T	C	chr03	642,147	TC	TC	TC	TC	TC	TC
flavonoid	Os04g0103900	CHS	3_prime_UTR_variant	chr04_259068	G	A	chr04	259,068	GA	GG	GG	GG	GG	GG
flavonoid	Os04g0103900	CHS	missense_variant	chr04_259218	C	G	chr04	259,218	CG	CG	CC	CC	CG	CG
flavonoid	Os04g0103900	CHS	synonymous_variant	chr04_259476	C	A	chr04	259,476	CA	CA	CC	CC	CC	CA
flavonoid	Os04g0103900	CHS	synonymous_variant	chr04_259860	G	A	chr04	259,860	GA	GA	GG	GG	GA	GG
flavonoid	Os04g0630800	ANR	5_prime_UTR_variant	chr04_32085618	T	G	chr04	32,085,618	TT	TG	TT	TT	TT	TT
flavonoid	Os04g0630800	ANR	synonymous_variant	chr04_32085724	T	C	chr04	32,085,724	TC	TT	TT	TC	TT	TT
flavonoid	Os04g0630800	ANR	missense_variant	chr04_32086168	C	G	chr04	32,086,168	CG	CC	CC	CC	CC	CC
flavonoid	Os04g0630800	ANR	synonymous_variant	chr04_32087273	G	T	chr04	32,087,273	GT	GT	GG	GT	GG	GG
flavonoid	Os04g0630800	ANR	intron_variant	chr04_32087431	T	C	chr04	32,087,431	TT	TT	TT	TT	TC	TT
flavonoid	Os04g0630800	ANR	synonymous_variant	chr04_32087634	T	C	chr04	32,087,634	TC	TC	TT	TC	TT	TT
flavonoid	Os04g0630800	ANR	missense_variant	chr04_32087780	G	A	chr04	32,087,780	GG	GG	GA	GG	GG	GG
flavonoid	Os04g0630800	ANR	synonymous_variant	chr04_32087808	T	C	chr04	32,087,808	TT	TT	TT	TC	TT	TT
flavonoid	Os04g0630800	ANR	missense_variant	chr04_32088067	G	C	chr04	32,088,067	GC	GG	GG	GC	GG	GG
flavonoid	Os04g0662600	F3H	synonymous_variant	chr04_33809808	C	T	chr04	33,809,808	CT	CC	CC	CC	CT	CT
flavonoid	Os04g0662600	F3H	missense_variant	chr04_33810105	G	C	chr04	33,810,105	GC	GG	GG	GC	GC	GC
flavonoid	Os04g0662600	F3H	intron_variant	chr04_33811947	G	A	chr04	33,811,947	GA	GG	GG	GG	GA	GA
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33814230	G	A	chr04	33,814,230	GA	GA	GA	GA	GA	GG
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33814296	T	C	chr04	33,814,296	TT	TT	TT	TT	TT	TC
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33814548	G	A	chr04	33,814,548	GA	GA	GA	GA	GA	GA
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33814904	G	A	chr04	33,814,904	GA	GA	GA	GA	GA	GA
folate	Os04g0662700	GTPCHI	synonymous_variant	chr04_33814904	G	A	chr04	33,814,904	GA	GA	GA	GA	GA	GA
folate	Os04g0662700	GTPCHI	synonymous_variant	chr04_33815486	A	G	chr04	33,815,486	AG	AG	AG	AG	AG	AG
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33815486	A	G	chr04	33,815,486	AG	AG	AG	AG	AG	AG
folate	Os04g0662700	GTPCHI	3_prime_UTR_variant	chr04_33815678	T	C	chr04	33,815,678	TC	TC	TC	TC	TC	TC
folate	Os04g0662700	GTPCHI	synonymous_variant	chr04_33815678	T	C	chr04	33,815,678	TC	TC	TC	TC	TC	TC
folate	Os04g0662700	GTPCHI	intron_variant	chr04_33816380	A	G	chr04	33,816,380	AA	AG	AG	AA	AA	AA
flavonoid	Os04g0206500	UGT	missense_variant	chr04_7153976	G	A	chr04	7,153,976	GG	GG	GA	GG	GG	GA
flavonoid	Os04g0206500	UGT	synonymous_variant	chr04_7154071	A	T	chr04	7,154,071	AT	AT	AA	AT	AT	AA
flavonoid	Os04g0206500	UGT	missense_variant	chr04_7154971	T	C	chr04	7,154,971	TT	TT	TC	TT	TT	TC
flavonoid	Os04g0206500	UGT	synonymous_variant	chr04_7155050	A	G	chr04	7,155,050	AG	AG	AA	AG	AG	AA
flavonoid	Os04g0206500	UGT	synonymous_variant	chr04_7155230	C	G	chr04	7,155,230	CC	CC	CC	CC	CC	CG
flavonoid	Os04g0206500	UGT	missense_variant	chr04_7155434	G	C	chr04	7,155,434	GC	GC	GC	GC	GC	GC
flavonoid	Os04g0206500	UGT	missense_variant	chr04_7155597	A	G	chr04	7,155,597	AG	AG	AG	AG	AG	AG
flavonoid	Os04g0206500	UGT	missense_variant	chr04_7155912	G	T	chr04	7,155,912	GG	GT	GG	GG	GT	GG
flavonoid	Os05g0320700	C4H	intron_variant	chr05_14901774	T	C	chr05	14,901,774	TT	TC	TC	TC	TC	TT
flavonoid	Os05g0320700	C4H	synonymous_variant	chr05_14902037	T	C	chr05	14,902,037	TC	TC	TC	TC	TC	TT
flavonoid	Os05g0320700	C4H	intron_variant	chr05_14902635	A	G	chr05	14,902,635	AA	AG	AA	AA	AA	AA
flavonoid	Os05g0320700	C4H	intron_variant	chr05_14903558	A	T	chr05	14,903,558	AA	AT	AT	AT	AA	AA
flavonoid	Os05g0320700	C4H	missense_variant	chr05_14903975	C	T	chr05	14,903,975	CT	CT	CT	CT	CT	CC
flavonoid	Os05g0427400	PAL	synonymous_variant	chr05_20954681	G	T	chr05	20,954,681	GG	GG	GG	GT	GT	GT
flavonoid	Os05g0427400	PAL	synonymous_variant	chr05_20955035	C	T	chr05	20,955,035	CC	CC	CC	CT	CT	CT
flavonoid	Os05g0499800	UGT	missense_variant	chr05_24606372	T	G	chr05	24,606,372	TT	TT	TT	TT	TT	TG
flavonoid	Os05g0499800	UGT	missense_variant	chr05_24606521	T	C	chr05	24,606,521	TT	TC	TT	TT	TT	TT
flavonoid	Os05g0499800	UGT	missense_variant	chr05_24607519	T	G	chr05	24,607,519	TT	TT	TT	TT	TG	TT
folate	Os05g0517500	GGH	3_prime_UTR_variant	chr05_25653377	G	A	chr05	25,653,377	GA	GA	GA	GA	GA	GA
folate	Os05g0517500	GGH	synonymous_variant	chr05_25653689	C	T	chr05	25,653,689	CC	CC	CC	CC	CT	CC
folate	Os05g0517500	GGH	synonymous_variant	chr05_25657433	G	C	chr05	25,657,433	GC	GC	GG	GC	GC	GC
flavonoid	Os05g0527000	UGT	3_prime_UTR_variant	chr05_26198547	A	G	chr05	26,198,547	AA	AG	AA	AA	AA	AG
flavonoid	Os05g0527000	UGT	missense_variant	chr05_26198601	T	A	chr05	26,198,601	TA	TT	TT	TT	TT	TT
flavonoid	Os05g0215300	UGT	5_prime_UTR_variant	chr05_7152432	C	G	chr05	7,152,432	CC	CG	CC	CC	CC	CC
flavonoid	Os05g0215300	UGT	synonymous_variant	chr05_7152595	C	T	chr05	7,152,595	CT	CT	CC	CC	CC	CC
flavonoid	Os05g0215300	UGT	missense_variant	chr05_7153014	G	A	chr05	7,153,014	GA	GA	GA	GG	GG	GG
flavonoid	Os05g0215300	UGT	synonymous_variant	chr05_7153534	G	A	chr05	7,153,534	GA	GA	GA	GG	GG	GG
folate	Os05g0244700	ADCL	synonymous_variant	chr05_8785708	G	T	chr05	8,785,708	GT	GT	GG	GT	GG	GT
folate	Os05g0244700	ADCL	missense_variant	chr05_8786295	G	C	chr05	8,786,295	GC	GC	GG	GC	GG	GC
folate	Os05g0244700	ADCL	missense_variant	chr05_8786309	C	T	chr05	8,786,309	CC	CC	CT	CC	CC	CC
folate	Os05g0244700	ADCL	synonymous_variant	chr05_8786635	T	G	chr05	8,786,635	TG	TG	TT	TG	TT	TG
folate	Os05g0244700	ADCL	synonymous_variant	chr05_8786755	G	A	chr05	8,786,755	GG	GG	GA	GG	GG	GG
folate	Os05g0244700	ADCL	missense_variant	chr05_8786983	C	T	chr05	8,786,983	CT	CT	CC	CT	CC	CT
flavonoid	Os06g0343600	UGT	synonymous_variant	chr06_13743866	T	C	chr06	13,743,866	TT	TT	TC	TT	TC	TC
flavonoid	Os06g0343600	UGT	missense_variant	chr06_13743912	G	A	chr06	13,743,912	GG	GG	GG	GA	GG	GG
flavonoid	Os06g0343600	UGT	synonymous_variant	chr06_13744397	C	G	chr06	13,744,397	CC	CG	CG	CG	CG	CC
flavonoid	Os06g0343600	UGT	5_prime_UTR_variant	chr06_13745198	G	T	chr06	13,745,198	GT	GT	GG	GG	GG	GT
flavonoid	Os06g0102100	C4H	missense_variant	chr06_164070	A	C	chr06	164,070	AA	AA	AC	AC	AA	AC
flavonoid	Os06g0102100	C4H	missense_variant	chr06_164713	A	G	chr06	164,713	AA	AA	AA	AG	AA	AG
flavonoid	Os06g0102100	C4H	synonymous_variant	chr06_164888	T	C	chr06	164,888	TC	TC	TC	TC	TC	TC
folate	Os06g0154600	DHNA	missense_variant	chr06_2816508	C	A	chr06	2,816,508	CA	CA	CA	CA	CA	CC
folate	Os06g0154600	DHNA	synonymous_variant	chr06_2817049	C	T	chr06	2,817,049	CT	CT	CC	CT	CT	CC
folate	Os06g0699700	ADCS	missense_variant	chr06_29417486	C	T	chr06	29,417,486	CC	CC	CC	CT	CC	CC
folate	Os06g0699700	ADCS	synonymous_variant	chr06_29417607	C	T	chr06	29,417,607	CC	CT	CT	CC	CT	CC
folate	Os06g0699700	ADCS	synonymous_variant	chr06_29418256	G	A	chr06	29,418,256	GA	GA	GA	GG	GA	GA
folate	Os06g0699700	ADCS	synonymous_variant	chr06_29418331	A	T	chr06	29,418,331	AA	AA	AA	AT	AA	AA
flavonoid	Os06g0192100	UGT	missense_variant	chr06_4648824	C	A	chr06	4,648,824	CC	CC	CC	CA	CC	CC
flavonoid	Os06g0192100	UGT	synonymous_variant	chr06_4649358	C	T	chr06	4,649,358	CT	CT	CT	CT	CT	CC
flavonoid	Os07g0571600	CHI	3_prime_UTR_variant	chr07_23076559	C	T	chr07	23,076,559	CC	CC	CT	CT	CT	CC
flavonoid	Os07g0571600	CHI	missense_variant	chr07_23078662	G	C	chr07	23,078,662	GC	GC	GC	GG	GG	GG
flavonoid	Os07g0571600	CHI	5_prime_UTR_variant	chr07_23078720	T	C	chr07	23,078,720	TT	TT	TT	TT	TC	TT
flavonoid	Os07g0148200	LDOX	synonymous_variant	chr07_2489702	C	T	chr07	2,489,702	CC	CT	CC	CC	CC	CT
flavonoid	Os07g0148200	LDOX	missense_variant	chr07_2490069	G	A	chr07	2,490,069	GG	GA	GA	GA	GA	GA
flavonoid	Os07g0148200	LDOX	synonymous_variant	chr07_2490281	G	T	chr07	2,490,281	GG	GT	GG	GG	GG	GG
folate	Os07g0618500	DHPS/HPPK	synonymous_variant	chr07_25525144	G	C	chr07	25,525,144	GC	GC	GC	GC	GC	GC
folate	Os07g0618500	DHPS/HPPK	synonymous_variant	chr07_25526281	G	T	chr07	25,526,281	GG	GG	GT	GG	GG	GG
folate	Os07g0618500	DHPS/HPPK	missense_variant	chr07_25526474	A	G	chr07	25,526,474	AG	AG	AG	AG	AG	AG
folate	Os07g0618500	DHPS/HPPK	3_prime_UTR_variant	chr07_25527444	T	C	chr07	25,527,444	TT	TC	TT	TT	TT	TT
folate	Os07g0618500	DHPS/HPPK	intron_variant	chr07_25528623	G	A	chr07	25,528,623	GG	GG	GA	GG	GG	GG
folate	Os07g0618500	DHPS/HPPK	3_prime_UTR_variant	chr07_25529930	T	C	chr07	25,529,930	TT	TC	TT	TT	TT	TT
flavonoid	Os07g0241800	UGT	synonymous_variant	chr07_7912347	C	A	chr07	7,912,347	CC	CC	CC	CA	CC	CC
flavonoid	Os07g0241800	UGT	missense_variant	chr07_7912438	G	A	chr07	7,912,438	GA	GA	GA	GG	GA	GA
flavonoid	Os07g0241800	UGT	missense_variant	chr07_7912666	G	A	chr07	7,912,666	GA	GA	GA	GA	GA	GA
flavonoid	Os07g0241800	UGT	missense_variant	chr07_7912924	C	T	chr07	7,912,924	CT	CT	CT	CT	CT	CT
flavonoid	Os07g0241800	UGT	missense_variant	chr07_7913399	C	T	chr07	7,913,399	CT	CT	CT	CC	CT	CT
flavonoid	Os08g0515900	DFR	3_prime_UTR_variant	chr08_25591426	G	A	chr08	25,591,426	GG	GA	GG	GA	GG	GA
flavonoid	Os08g0515900	DFR	missense_variant	chr08_25591721	C	T	chr08	25,591,721	CT	CT	CT	CT	CC	CT
flavonoid	Os08g0515900	DFR	intron_variant	chr08_25591895	T	C	chr08	25,591,895	TT	TC	TT	TT	TT	TT
flavonoid	Os08g0515900	DFR	synonymous_variant	chr08_25592152	G	A	chr08	25,592,152	GG	GA	GG	GA	GG	GA
flavonoid	Os08g0515900	DFR	synonymous_variant	chr08_25592397	G	A	chr08	25,592,397	GG	GA	GG	GG	GG	GG
folate	Os08g0556200	DHNA	intron_variant	chr08_27833422	C	T	chr08	27,833,422	CC	CT	CC	CC	CC	CC
folate	Os08g0556200	DHNA	intron_variant	chr08_27833564	G	T	chr08	27,833,564	GG	GG	GG	GT	GG	GG
folate	Os08g0556200	DHNA	3_prime_UTR_variant	chr08_27834093	A	G	chr08	27,834,093	AG	AG	AG	AG	AG	AG
flavonoid	Os08g0183900	DFR	3_prime_UTR_variant	chr08_4898475	T	C	chr08	4,898,475	TT	TC	TC	TC	TT	TT
flavonoid	Os08g0183900	DFR	missense_variant	chr08_4898933	G	C	chr08	4,898,933	GG	GC	GG	GG	GG	GG
flavonoid	Os08g0183900	DFR	missense_variant	chr08_4899014	A	T	chr08	4,899,014	AT	AA	AT	AT	AA	AA
flavonoid	Os08g0183900	DFR	missense_variant	chr08_4899488	G	T	chr08	4,899,488	GG	GG	GG	GG	GG	GT
flavonoid	Os08g0183900	DFR	synonymous_variant	chr08_4899559	G	A	chr08	4,899,559	GA	GA	GG	GA	GG	GG
flavonoid	Os08g0183900	DFR	missense_variant	chr08_4899875	C	A	chr08	4,899,875	CA	CA	CC	CA	CC	CC
flavonoid	Os08g0183900	DFR	synonymous_variant	chr08_4899886	G	A	chr08	4,899,886	GG	GG	GA	GG	GG	GG
folate	Os09g0553300	DHNP3	intron_variant	chr09_21925482	A	G	chr09	21,925,482	AA	AA	AA	AA	AA	AG
folate	Os09g0553300	DHNP3	synonymous_variant	chr09_21925883	C	A	chr09	21,925,883	CC	CC	CA	CC	CC	CC
folate	Os09g0560500	DHNA	5_prime_UTR_variant	chr09_22272985	A	G	chr09	22,272,985	AA	AA	AG	AA	AG	AA
folate	Os09g0560500	DHNA	5_prime_UTR_variant	chr09_22273032	A	G	chr09	22,273,032	AA	AA	AA	AA	AA	AG
folate	Os09g0560500	DHNA	synonymous_variant	chr09_22273728	C	G	chr09	22,273,728	CC	CC	CG	CC	CG	CG
folate	Os09g0560500	DHNA	missense_variant	chr09_22274040	A	G	chr09	22,274,040	AA	AA	AG	AA	AG	AG
folate	Os09g0560500	DHNA	missense_variant	chr09_22274617	G	A	chr09	22,274,617	GG	GG	GG	GG	GA	GG
folate	Os09g0560500	DHNA	missense_variant	chr09_22274644	G	A	chr09	22,274,644	GG	GG	GA	GG	GG	GA
folate	Os10g0503200	FPGS	3_prime_UTR_variant	chr10_19201609	T	C	chr10	19,201,609	TT	TT	TT	TT	TC	TT
folate	Os10g0503200	FPGS	3_prime_UTR_variant	chr10_19202433	C	T	chr10	19,202,433	CC	CT	CC	CT	CC	CC
folate	Os10g0503200	FPGS	synonymous_variant	chr10_19202433	C	T	chr10	19,202,433	CC	CT	CC	CT	CC	CC
folate	Os10g0503200	FPGS	intron_variant	chr10_19202618	T	G	chr10	19,202,618	TT	TG	TT	TT	TT	TT
folate	Os10g0503200	FPGS	synonymous_variant	chr10_19203519	A	G	chr10	19,203,519	AG	AG	AG	AG	AA	AA
folate	Os10g0503200	FPGS	3_prime_UTR_variant	chr10_19203519	A	G	chr10	19,203,519	AG	AG	AG	AG	AA	AA
flavonoid	Os10g0536400	F3H	5_prime_UTR_variant	chr10_20886484	T	C	chr10	20,886,484	TC	TC	TC	TC	TC	TC
flavonoid	Os10g0536400	F3H	intron_variant	chr10_20890546	C	G	chr10	20,890,546	CC	CG	CC	CC	CC	CC
flavonoid	Os10g0536400	F3H	intron_variant	chr10_20890658	A	G	chr10	20,890,658	AG	AA	AG	AG	AG	AG
flavonoid	Os10g0536400	F3H	intron_variant	chr10_20891691	C	T	chr10	20,891,691	CT	CT	CT	CT	CT	CT
flavonoid	Os10g0536400	F3H	3_prime_UTR_variant	chr10_20891953	G	C	chr10	20,891,953	GC	GC	GG	GG	GG	GC
flavonoid	Os10g0559500	F3H	3_prime_UTR_variant	chr10_22020007	T	C	chr10	22,020,007	TT	TT	TT	TC	TC	TT
flavonoid	Os10g0559500	F3H	3_prime_UTR_variant	chr10_22020782	T	C	chr10	22,020,782	TT	TT	TC	TT	TT	TT
flavonoid	Os10g0559500	F3H	synonymous_variant	chr10_22021217	A	G	chr10	22,021,217	AA	AA	AA	AG	AG	AG
flavonoid	Os10g0559500	F3H	synonymous_variant	chr10_22021301	A	G	chr10	22,021,301	AG	AG	AG	AA	AA	AA
flavonoid	Os10g0559500	F3H	intron_variant	chr10_22021577	G	A	chr10	22,021,577	GG	GG	GG	GA	GG	GG
flavonoid	Os10g0578950	4CL	missense_variant	chr10_23084385	G	C	chr10	23,084,385	GG	GC	GG	GG	GG	GG
flavonoid	Os10g0578950	4CL	missense_variant	chr10_23085559	G	T	chr10	23,085,559	GG	GT	GG	GG	GG	GG
flavonoid	Os10g0578950	4CL	synonymous_variant	chr10_23085764	A	C	chr10	23,085,764	AA	AC	AA	AA	AA	AA
flavonoid	Os10g0578950	4CL	synonymous_variant	chr10_23085833	T	C	chr10	23,085,833	TT	TT	TC	TT	TC	TT
flavonoid	Os10g0320100	F3'H	missense_variant	chr10_8679372	C	A	chr10	8,679,372	CC	CC	CC	CC	CA	CA
flavonoid	Os10g0320100	F3'H	synonymous_variant	chr10_8679437	C	T	chr10	8,679,437	CC	CT	CC	CT	CC	CC
flavonoid	Os10g0320100	F3'H	synonymous_variant	chr10_8679749	T	G	chr10	8,679,749	TT	TG	TG	TT	TG	TG
flavonoid	Os10g0320100	F3'H	synonymous_variant	chr10_8679821	A	C	chr10	8,679,821	AC	AA	AA	AA	AA	AA
flavonoid	Os11g0444000	UGT	missense_variant	chr11_14673251	G	T	chr11	14,673,251	GG	GG	GG	GG	GT	GG
flavonoid	Os11g0444000	UGT	synonymous_variant	chr11_14675339	G	C	chr11	14,675,339	GG	GG	GG	GG	GG	GC
folate	Os11g0484400	DHFR	5_prime_UTR_variant	chr11_17054274	C	T	chr11	17,054,274	CC	CC	CC	CC	CT	CT
folate	Os11g0484400	DHFR	5_prime_UTR_variant	chr11_17055779	A	C	chr11	17,055,779	AC	AC	AC	AC	AA	AA
folate	Os11g0484400	DHFR	missense_variant	chr11_17055837	G	A	chr11	17,055,837	GG	GG	GG	GG	GA	GG
folate	Os11g0484400	DHFR	missense_variant	chr11_17056621	G	A	chr11	17,056,621	GA	GA	GA	GG	GG	GG
folate	Os11g0484400	DHFR	missense_variant	chr11_17057713	A	T	chr11	17,057,713	AA	AA	AA	AT	AA	AA
folate	Os11g0484400	DHFR	missense_variant	chr11_17058690	C	A	chr11	17,058,690	CA	CA	CA	CC	CC	CC
folate	Os11g0484400	DHFR	3_prime_UTR_variant	chr11_17060904	C	A	chr11	17,060,904	CA	CA	CA	CA	CA	CA
flavonoid	Os11g0599200	UGT	3_prime_UTR_variant	chr11_22926334	A	G	chr11	22,926,334	AG	AA	AA	AA	AA	AG
flavonoid	Os11g0599200	UGT	synonymous_variant	chr11_22926474	C	T	chr11	22,926,474	CC	CC	CC	CC	CT	CC
flavonoid	Os11g0599200	UGT	synonymous_variant	chr11_22926546	C	G	chr11	22,926,546	CG	CG	CC	CC	CC	CC
flavonoid	Os11g0599200	UGT	synonymous_variant	chr11_22926741	G	A	chr11	22,926,741	GG	GG	GG	GG	GG	GA
flavonoid	Os11g0599200	UGT	missense_variant	chr11_22927104	G	T	chr11	22,927,104	GT	GT	GG	GG	GT	GG
flavonoid	Os11g0599200	UGT	missense_variant	chr11_22927285	C	T	chr11	22,927,285	CC	CC	CC	CC	CC	CT
flavonoid	Os11g0599200	UGT	5_prime_UTR_variant	chr11_22927976	G	A	chr11	22,927,976	GG	GG	GG	GG	GG	GA
folate	Os12g0446900	DHFR	intron_variant	chr12_15133454	T	C	chr12	15,133,454	TT	TT	TC	TC	TT	TT
folate	Os12g0623800	DHFS	synonymous_variant	chr12_26636096	A	G	chr12	26,636,096	AA	AG	AG	AG	AG	AG
Pathway			SNPs effect				Chr