Agri & Biosynthetic Genes

Search for genes related to agronomically important traits:

Rice Traits :

Rice Traits	MSU Gene ID	RAPDB Gene ID	MBKBASE Gene ID	Gene name	Gene symbol	Gene description	References
Abiotic stress	LOC_Os03g01320	Os03g0103300	OsR498G0305077300.01	NA	qLTG3-1	LTPL116 - Protease inhibitor%2Fseed storage%2FLTP family protein precursor, expressed	Fujino et al., 2008
Abiotic stress	LOC_Os03g01320	Os03g0103300	OsR498G0305077600.01	NA	qLTG3-1	LTPL116 - Protease inhibitor%2Fseed storage%2FLTP family protein precursor, expressed	Fujino et al., 2008
Disease resistance	LOC_Os04g32850	Os04g0401000	OsR498G0408477200.01	NA	Pi21	basic proline-rich protein, putative, expressed	Fukuoka et al., 2009
Yield	LOC_Os09g26999	Os09g0441900	OsR498G0917547300.01	NA	DEP1	keratin-associated protein 5-4, putative, expressed	Huang et al., 2009c
Yield	LOC_Os06g41850	Os06g0623700	OsR498G0612972900.01	NA	TGW6	SMP-30%2FGluconolaconase%2FLRE-like region containing protein, expressed	Ishimaru et al., 2013
Yield	LOC_Os08g39890	Os08g0509600	OsR498G0816442600.01	NA	IPA1	OsSPL14 - SBP-box gene family member, expressed	Jiao et al., 2010; Zhang et al., 2017a
Yield/grain size	LOC_Os05g06660	Os05g0158500	OsR498G0509781400.01	NA	GS5	OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed	Li et al., 2011b
NUE	LOC_Os01g45990	Os01g0648000	OsR498G0101651000.01	NA	OsAKT1	potassium channel AKT1, putative, expressed	Li et al., 2014b
Yield	LOC_Os01g66100	Os01g0883800	OsR498G0102466500.01	NA	SD1	gibberellin 20 oxidase 2, putative, expressed	Lo et al., 2008
Yield	LOC_Os06g45460	Os06g0665400	OsR498G0613125600.01	NA	SCM2/APO1	OsFBX202 - F-box domain containing protein, expressed	Ookawa et al., 2010
NA	LOC_Os01g10040	Os01g0197100	OsR498G0100341300.01	DWARF EBISU	D2	cytochrome P450, putative, expressed	RAPDB
NA	LOC_Os01g20160	Os01g0307500	OsR498G0100765000.01	HIGH-AFFINITY K+ TRANSPORTER 8	HKT8	OsHKT1;5 - Na%2B transporter, expressed	RAPDB
NA	LOC_Os01g51610	Os01g0713600	OsR498G0101878300.01	LATE-FLOWERING 1	LFL1	B3 DNA binding domain containing protein, expressed	RAPDB
NA	LOC_Os01g52050	Os01g0718300	OsR498G0101902000.01	DWARF 61	D61	systemin receptor SR160 precursor, putative, expressed	RAPDB
NA	LOC_Os01g62920	Os01g0848400	OsR498G0102332000.01	Shattering (QTL)-1	qSH1	homeodomain protein, putative, expressed	RAPDB
NA	LOC_Os01g64000	Os01g0859300	OsR498G0102377300.01	ABA INSENSITIVE 5	ABI5	bZIP transcription factor, putative, expressed	RAPDB
NA	LOC_Os01g68370	Os01g0911700	OsR498G0102558000.01	VIVIPAROUS 1	VP1	B3 DNA binding domain containing protein, expressed	RAPDB
NA	LOC_Os01g69850	Os01g0922800	OsR498G0102603900.01	MADS BOX GENE 51	MADS51	OsMADS65 - MADS-box family gene with MIKC%2A type-box, expressed	RAPDB
NA	LOC_Os02g02780	Os02g0120100	OsR498G0202861000.01	ACT DOMAIN CONTAINING PROTEIN KINASE 1	ACTPK1	protein kinase family protein, putative, expressed	RAPDB
NA	LOC_Os02g47470	Os02g0703600	OsR498G0204611500.01	ABA-8'-HYDROXYLASE 1	ABA8OX1	cytochrome P450, putative, expressed	RAPDB
NA	LOC_Os02g49230	Os02g0724000	OsR498G0204681300.01	Days to heading on chromosome 2	DTH2	CCT%2FB-box zinc finger protein, putative, expressed	RAPDB
NA	LOC_Os02g54600	Os02g0787300	OsR498G0204906600.01	SMALL GRAIN 1	SMG1	STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed	RAPDB
NA	LOC_Os03g02160	Os03g0112700	OsR498G0305108900.01	EARLY HEADING DATE 4	EHD4	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed	RAPDB
NA	LOC_Os03g49350	Os03g0700400	OsR498G0306873300.01	LIPOXYGENASE 3	LOX3	lipozygenase protein, putative, expressed	RAPDB
NA	LOC_Os03g55389	Os03g0762000	OsR498G0307088600.01	HEADING DATE 6	HD6	casein kinase II subunit alpha-1, putative, expressed	RAPDB
NA	LOC_Os03g57940	Os03g0793500	OsR498G0307192700.01	HEADING DATE16	HD16	CK1_CaseinKinase_1a.4 - CK1 includes the casein kinase 1 kinases, expressed	RAPDB
NA	LOC_Os03g03100	Os03g0122600	OsR498G0362582800.01	MADS BOX GENE 50	MADS50	OsMADS50 - MADS-box family gene with MIKCc type-box, expressed	RAPDB
NA	LOC_Os04g39430	Os04g0469800	OsR498G0408738400.01	DWARF SHINKANEAIKOKU OR NOHRIN 28	D11	cytochrome P450, putative, expressed	RAPDB
NA	LOC_Os04g52479	Os04g0615000	OsR498G0409276700.01	NARROW LEAF 1	NAL1	peptidase, trypsin-like serine and cysteine proteases, putative, expressed	RAPDB
NA	LOC_Os05g09520	Os05g0187500	OsR498G0509898500.01	GRAIN WIDTH 5	GW5	IQ calmodulin-binding motif family protein, expressed	RAPDB
NA	LOC_Os05g11730	Os05g0207500	OsR498G0509991200.01	GSK3/SHAGGY-Like Kinase 2	GSK2	CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	RAPDB
NA	LOC_Os06g03710	Os06g0127800	OsR498G0611554400.01	DWARF AND LOW-TILLERING	DLT	DELLA protein SLR1, putative, expressed	RAPDB
NA	LOC_Os06g05060	Os06g0142600	OsR498G0611607800.01	HEADING DATE 3B	HD3B	ELF3 protein, putative, expressed	RAPDB
NA	LOC_Os06g06090	Os06g0154500	OsR498G0611646000.01	MITOGEN-ACTIVATED PROTEIN KINASE 6	MAPK6	CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed	RAPDB
NA	LOC_Os06g06320	Os06g0157700	OsR498G0611656900.01	HEADING DATE 3A	HD3A	osFTL2 FT-Like2 homologous to Flowering Locus T gene; contains Pfam profile PF01161%3A Phosphatidylethanolamine-binding protein, expressed	RAPDB
NA	LOC_Os06g16370	Os06g0275000	OsR498G0612090700.01	HEADING DATE 1	HD1	CCT%2FB-box zinc finger protein, putative, expressed	RAPDB
NA	LOC_Os06g44100	Os06g0650300	OsR498G0613071000.01	Grain weight on chromosome 6-a	GW6a	HLS, putative, expressed	RAPDB
NA	LOC_Os07g12900	Os07g0232900	OsR498G0713834000.01	HEAVY METAL ATPASE 3	HMA3	cadmium%2Fzinc-transporting ATPase, putative, expressed	RAPDB
NA	LOC_Os07g13170	Os07g0235800	OsR498G0713843700.01	SUPERNUMERARY BRACT GENE	SNB	AP2 domain containing protein, expressed	RAPDB
NA	LOC_Os07g15370	Os07g0257200	OsR498G0713916200.01	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5	NRAMP5	metal transporter Nramp6, putative, expressed	RAPDB
NA	LOC_Os07g39220	Os07g0580500	OsR498G0714632200.01	BRASSINAZOLE RESISTANT 1	BZR1	BES1%2FBZR1 homolog protein, putative, expressed	RAPDB
NA	LOC_Os07g39700	Os07g0585700	OsR498G0714655100.01	SEED DORMANCY 4	Sdr4	expressed protein	RAPDB
NA	LOC_Os08g04780	Os08g0143400	OsR498G0815152000.01	Heading date 18	Hd18	amine oxidase, putative, expressed	RAPDB
NA	LOC_Os08g42540	Os08g0537800	OsR498G0816541400.01	heterotrimeric G protein beta 1 subunit	RGB1	ubiquitin thioesterase otubain-like, putative, expressed	RAPDB
NA	LOC_Os08g44840	Os08g0562500	OsR498G0816619200.01	SLENDER GRAIN	SLG	transferase family protein, putative, expressed	RAPDB
NA	LOC_Os09g26840	Os09g0439800	OsR498G0917539200.01	DEEPER ROOTING 1	DRO1	expressed protein	RAPDB
NA	LOC_Os09g29820	Os09g0474000	OsR498G0969279700.01	BZIP TRANSCRIPTION FACTOR TFX1	TFX1	bZIP transcription factor domain containing protein, expressed	RAPDB
NA	LOC_Os10g32600	Os10g0463400	OsR498G1018858200.01	EARLINESS 1	EF1	MYB family transcription factor, putative, expressed	RAPDB
NA	LOC_Os10g33780	Os10g0478000	OsR498G1018905000.01	G1 LIKE PROTEIN 5	G1L5	DUF640 domain containing protein, putative, expressed	RAPDB
NA	LOC_Os01g25484	Os01g0357100	OsR498G0100930500.01	PROMOTER OF SHOOT REGENERATION 1	PSR1	ferredoxin--nitrite reductase, putative, expressed	RAPDB
NA	LOC_Os01g25484	Os01g0357100	OsR498G0100931900.01	PROMOTER OF SHOOT REGENERATION 1	PSR1	ferredoxin--nitrite reductase, putative, expressed	RAPDB
NA	LOC_Os01g43250	Os01g0620100	OsR498G0101558200.01	NA	OsWD40-19	WD domain, G-beta repeat domain containing protein, expressed	RAPDB
NA	LOC_Os01g52050	Os01g0718300	OsR498G0101902100.01	DWARF 61	D61	systemin receptor SR160 precursor, putative, expressed	RAPDB
NA	LOC_Os01g56510	Os01g0771900	OsR498G0102070800.01	NA	RBG2	periplasmic beta-glucosidase precursor, putative, expressed	RAPDB
NA	LOC_Os03g03070	Os03g0122600	OsR498G0305144600.01	MADS BOX GENE 50	MADS50	transcription factor, putative, expressed	RAPDB
NA	LOC_Os04g39430	Os04g0469800	OsR498G0408738100.01	DWARF SHINKANEAIKOKU OR NOHRIN 28	D11	cytochrome P450, putative, expressed	RAPDB
NA	LOC_Os04g47059	Os04g0557500	OsR498G0409061000.01	PURPLE LEAF	PL	TRANSPARENT TESTA 8, putative, expressed	RAPDB
NA	LOC_Os06g12210	Os06g0226500	OsR498G0611916500.01	BRASSINOSTEROID UPREGULATED 1	BU1	helix-loop-helix DNA-binding domain containing protein, expressed	RAPDB
NA	LOC_Os06g16370	Os06g0275000	OsR498G0612090600.01	HEADING DATE 1	HD1	CCT%2FB-box zinc finger protein, putative, expressed	RAPDB
NA	LOC_Os07g11020	Os07g0211500	OsR498G0713747700.01	BROWN PERICARP AND SEED COAT	RC	rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed	RAPDB
NA	LOC_Os07g12900	Os07g0232900	OsR498G0713834100.01	HEAVY METAL ATPASE 3	HMA3	cadmium%2Fzinc-transporting ATPase, putative, expressed	RAPDB
NA	LOC_Os07g47330	Os07g0669500	OsR498G0714927600.01	FRIZZY PANICLE	FZP	AP2 domain containing protein, expressed	RAPDB
NA	LOC_Os08g07740	Os08g0174500	OsR498G0815298200.01	Heading date (QTL)-5(t)	HD5	histone-like transcription factor and archaeal histone, putative, expressed	RAPDB
NA	LOC_Os09g29820	Os09g0474000	OsR498G0917669900.01	BZIP TRANSCRIPTION FACTOR TFX1	TFX1	bZIP transcription factor domain containing protein, expressed	RAPDB
NA	LOC_Os10g28360	Os10g0419500	OsR498G1018737000.01	NA	OsARD4	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed	RAPDB
NA	LOC_Os11g08410	Os11g0187200	OsR498G1119538300.01	GATA TRANSCRIPTION FACTOR 28	GATA28	GATA zinc finger domain containing protein, expressed	RAPDB
Yield/grain size	LOC_Os02g14720	Os02g0244100	OsR498G0203315700.01	NA	GW2	expressed protein	Song et al., 2007
NUE	LOC_Os09g26999	Os09g0441900	OsR498G0917547300.01	NA	qNGR9	keratin-associated protein 5-4, putative, expressed	Sun et al., 2014
Grain quality	LOC_Os06g04200	Os06g0133000	OsR498G0611577100.01	NA	Waxy	starch synthase, putative, expressed	Tian et al., 2009
Yield/grain size	LOC_Os08g41940	Os08g0531600	OsR498G0816518900.01	NA	OsSPL16	OsSPL16 - SBP-box gene family member, expressed	Wang et al., 2012
Yield	LOC_Os07g15770	Os07g0261200	OsR498G0713935400.01	NA	Ghd7	CCT motif family protein, expressed	Xue et al., 2008
Reproductive development	LOC_Os01g10504	Os01g0201700	OsR498G0100361800.01	NA	OsMADS3	OsMADS3 - MADS-box family gene with MIKCc type-box, expressed	Hu et al., 2011
Disease resistance	LOC_Os01g12900	Os01g0229400	OsR498G0100475200.01	NA	OsRac1	ras-related protein, putative, expressed	Nakashima et al., 2008
Reproductive development	LOC_Os01g15448	Os01g0258600	OsR498G0100585300.01	NA	DPL1	expressed protein	Mizuta et al., 2010
Reproductive development	LOC_Os01g16810	Os01g0274800	OsR498G0100647800.01	NA	CSA	MYB family transcription factor, putative, expressed	Zhang et al., 2010
Disease resistance	LOC_Os01g25820	Os01g0360200	OsR498G0100943000.01	NA	Rac1-RbohB/H	respiratory burst oxidase, putative, expressed	Nagano et al., 2016
Reproductive development	LOC_Os01g39670	Os01g0578500	OsR498G0101395900.01	NA	SaF	OsFBD1 - F-box and FBD domain containing protein, expressed	Long et al., 2008
Reproductive development	LOC_Os01g39680	Os01g0578700	OsR498G0101396500.01	NA	SaM	expressed protein	Long et al., 2008
Disease resistance	LOC_Os01g49290	Os01g0686800	OsR498G0101788300.01	NA	RACK1	WD repeat-containing protein, putative, expressed	Nakashima et al., 2008
NUE	LOC_Os01g50820	Os01g0704100	OsR498G0101845100.01	NA	OsNRT2.3b	transporter, major facilitator family, putative, expressed	Fan et al., 2016a
NUE	LOC_Os01g54550	Os01g0749300	OsR498G0101994300.01	NA	HsfA4a	HSF-type DNA-binding domain containing protein, expressed	Shim et al., 2009
Disease resistance	LOC_Os01g56420	Os01g0770700	OsR498G0102067000.01	NA	COPT1	ctr copper transporter family protein, putative, expressed	Yuan et al., 2010
Disease resistance	LOC_Os01g56420	Os01g0770700	OsR498G0102066700.01	NA	COPT1	ctr copper transporter family protein, putative, expressed	Yuan et al., 2010
Disease resistance	LOC_Os01g56470	Os01g0771200	OsR498G0102068700.01	NA	XB24	mal d 1-associated protein, putative, expressed	Chen et al., 2010
Reproductive development	LOC_Os01g59660	Os01g0812000	OsR498G0102195500.01	NA	OsGAmyb	MYB family transcription factor, putative, expressed	Aya et al., 2009
Yield	LOC_Os01g61480	Os01g0831000	OsR498G0102266700.01	NA	LAX1	helix-loop-helix DNA-binding domain containing protein, expressed	Oikawa and Kyozuka, 2009
Grain quality	LOC_Os01g65670	Os01g0878700	OsR498G0102447200.01	NA	OsAAP6	amino acid transporter, putative, expressed	Peng et al., 2014
NUE	LOC_Os02g03900	Os02g0131800	OsR498G0202904800.01	NA	NRAT1	metal transporter Nramp6, putative, expressed	Xia et al., 2010
NUE	LOC_Os02g10290	Os02g0196600	OsR498G0203152500.01	NA	OsHMA4	copper-transporting ATPase, putative, expressed	Huang et al., 2016
Abiotic stress	LOC_Os02g42780	Os02g0640500	OsR498G0204399600.01	NA	SIT1	lectin receptor-type protein kinase, putative, expressed	Li et al., 2014a
Yield	LOC_Os02g47280	Os02g0701300	OsR498G0204603200.01	NA	GL2/OsGRF4	growth-regulating factor, putative, expressed	Che et al., 2015; Duan et al., 2015
Yield	LOC_Os02g49840	Os02g0731200	OsR498G0204707300.01	NA	OsMADS57	OsMADS57 - MADS-box family gene with MIKCc type-box, expressed	Guo et al., 2013
Disease resistance	LOC_Os02g51180	Os02g0746000	OsR498G0204766600.01	NA	OsCUL3a	cullin, putative, expressed	Liu et al., 2017b
Abiotic stress	LOC_Os02g52250	Os02g0759800	OsR498G0204814200.01	NA	OsSKIPa	SKIP%2FSNW domain containing protein, expressed	Hou et al., 2009
Yield	LOC_Os03g03150	Os03g0123300	OsR498G0305148100.01	NA	TAD1/TE	WD repeat-containing protein, putative, expressed	Lin et al., 2012; Xu et al., 2012
Reproductive development	LOC_Os03g07250	Os03g0168600	OsR498G0305293200.01	NA	CYP704B2	cytochrome P450, putative, expressed	Li et al., 2010b
Yield	LOC_Os03g07920	Os03g0175800	OsR498G0305316300.01	NA	BG1	expressed protein	Liu et al., 2015a
Yield	LOC_Os03g10210	Os03g0198600	OsR498G0305403200.01	NA	HOX12	homeobox domain containing protein, expressed	Gao et al., 2016
Yield	LOC_Os03g10620	Os03g0203200	OsR498G0305418300.01	NA	D14	hydrolase, alpha%2Fbeta fold family domain containing protein, expressed	Zhao et al., 2015b
NUE	LOC_Os03g10940	Os03g0207300	OsR498G0305432000.01	NA	CK2Œ±3	casein kinase II subunit alpha-2, putative, expressed	Chen et al., 2015
Grain quality	LOC_Os03g11100	Os03g0209400	OsR498G0305437700.01	NA	GPA4	vesicle transport protein GOT1B, putative, expressed	Wang et al., 2016b
Abiotic stress	LOC_Os03g11550	Os03g0214200	OsR498G0305451600.01	NA	MODD	protein of unknown function DUF1675 domain containing protein, expressed	Tang et al., 2016
Disease resistance	LOC_Os03g11614	Os03g0215400	OsR498G0305455800.01	NA	LHS1	OsMADS1 - MADS-box family gene with MIKCc type-box, expressed	Yi et al., 2009
Abiotic stress	LOC_Os03g26970	Os03g0387100	OsR498G0306069500.01	NA	OsTT1	peptidase, T1 family, putative, expressed	Li et al., 2015
Yield/grain size	LOC_Os03g44500	Os03g0646900	OsR498G0306665600.01	NA	GL3.1	serine%2Fthreonine protein phosphatase, putative, expressed	Qi et al., 2012
Abiotic stress	LOC_Os03g49990	Os03g0707600	OsR498G0306900900.01	NA	SLR1	GRAS family transcription factor domain containing protein, expressed	Fukao and Bailey-Serres, 2008
Abiotic stress	LOC_Os03g49990	Os03g0707600	OsR498G0306901200.01	NA	SLR1	GRAS family transcription factor domain containing protein, expressed	Fukao and Bailey-Serres, 2008
Grain quality	LOC_Os03g55090	Os03g0758100	OsR498G0307078200.01	NA	OsPho1	alpha-glucan phosphorylast isozyme, putative, expressed	Satoh et al., 2008
Yield/abiotic stress	LOC_Os03g57240	Os03g0786400	OsR498G0307171400.01	NA	DST	ZOS3-19 - C2H2 zinc finger protein, expressed	Li et al., 2013b; Huang et al., 2009b
Yield	LOC_Os03g60110	Os03g0815700	OsR498G0307268300.01	NA	SPIN1	KH domain containing protein, putative, expressed	Vega-Sa´ nchez et al., 2008
NUE	LOC_Os03g61200	Os03g0827500	OsR498G0307307900.01	NA	SPX4	expressed protein	Lv et al., 2014
Abiotic stress	LOC_Os04g04330	Os04g0132500	OsR498G0407514500.01	NA	CTB4a	receptor-like protein kinase 2 precursor, putative, expressed	Zhang et al., 2017c
Yield	LOC_Os04g08740	Os04g0169100	OsR498G0407621300.01	NA	ETR2	ethylene receptor, putative, expressed	Wuriyanghan et al., 2009
Yield	LOC_Os04g28280	Os04g0350700	OsR498G0408230800.01	NA	An-1	BEE 3, putative, expressed	Luo et al., 2013b
Yield	LOC_Os04g33740	Os04g0413500	OsR498G0408530100.01	NA	GIF1	glycosyl hydrolases, putative, expressed	Wang et al., 2008a
Yield	LOC_Os04g51000	Os04g0598300	OsR498G0409213000.01	NA	RFL	transcription factor FL, putative, expressed	Rao et al., 2008
Abiotic stress	LOC_Os04g51180	Os04g0600800	OsR498G0409221600.01	NA	COLD1	GPR89A, putative, expressed	Ma et al., 2015b
Grain quality	LOC_Os04g55230	Os04g0645100	OsR498G0409370100.01	NA	FLO2	tetratricopeptide repeat domain containing protein, putative, expressed	She et al., 2010
Yield	LOC_Os04g55510	Os04g0648800	OsR498G0409381900.01	NA	HAF1	zinc finger, C3HC4 type domain containing protein, expressed	Yang et al., 2015b
NUE	LOC_Os05g02750	Os05g0119000	OsR498G0509614300.01	NA	STAR2	ABC transporter, membrane-spanning%2Fpermease subunit, putative, expressed	Huang et al., 2009a
Reproductive development	LOC_Os05g05280	Os05g0145000	OsR498G0509725000.01	NA	PTB1	zinc finger family protein, putative, expressed	Li et al., 2013a
Grain quality	LOC_Os05g06480	Os05g0156900	OsR498G0509774400.01	NA	Chalk5	inorganic H%2B pyrophosphatase, putative, expressed	Li et al., 2014c
Disease resistance	LOC_Os05g35050	Os05g0424700	OsR498G0510875900.01	NA	COPT5	ctr copper transporter family protein, putative, expressed	Yuan et al., 2010
Reproductive development	LOC_Os05g50270	Os05g0578900	OsR498G0511398700.01	NA	NL1	GATA zinc finger domain containing protein, expressed	Wang et al., 2009
Disease resistance	LOC_Os06g03580	Os06g0125800	OsR498G0611549100.01	NA	OsBBI1	zinc RING finger protein, putative, expressed	Li et al., 2011a
NUE	LOC_Os06g05160	Os06g0143700	OsR498G0611611000.01	NA	SPDT	sulfate transporter, putative, expressed	Yamaji et al., 2016
Abiotic stress	LOC_Os06g10230	Os06g0203800	OsR498G0611808400.01	NA	ERECTA	receptor-like protein kinase 5 precursor, putative, expressed	Shen et al., 2015
Reproductive development	LOC_Os06g10990	Os06g0212900	OsR498G0611846200.01	NA	S5-ORF3	DnaK family protein, putative, expressed	Yang et al., 2012
Reproductive development	LOC_Os06g11010	Os06g0213100	OsR498G0611846900.01	NA	S5-ORF5	eukaryotic aspartyl protease domain containing protein, expressed	Yang et al., 2012
NUE	LOC_Os06g12310	Os06g0228200	OsR498G0611927800.01	NA	Lsi6	aquaporin protein, putative, expressed	Yamaji et al., 2008
Abiotic stress	LOC_Os06g36670	Os06g0562200	OsR498G0612770700.01	NA	PYL9	bet v I allergen family protein, putative, expressed	Zhao et al., 2016a
NUE	LOC_Os06g40120	Os06g0603600	OsR498G0612897800.01	NA	SPX1	SPX domain containing protein, putative, expressed	Wang et al., 2014e
NUE	LOC_Os06g48060	Os06g0695800	OsR498G0613235600.01	NA	STAR1	ABC transporter, ATP-binding protein, putative, expressed	Huang et al., 2009a
NUE	LOC_Os06g48800	Os06g0701600	OsR498G0613256400.01	NA	OsHKT2;4	OsHKT2;4 - Na%2B transporter, expressed	Lan et al., 2010
NUE	LOC_Os06g49250	Os06g0706500	OsR498G0613276500.01	NA	OsPTR9	peptide transporter PTR2, putative, expressed	Fang et al., 2013
NUE	LOC_Os06g49250	Os06g0706400	OsR498G0613276500.01	NA	OsPTR9	peptide transporter PTR2, putative, expressed	Fang et al., 2013
Reproductive development	LOC_Os07g04670	Os07g0139300	OsR498G0713486200.01	NA	G1	DUF640 domain containing protein, putative, expressed	Yoshida et al., 2009
Yield/grain size	LOC_Os07g32170	Os07g0505200	OsR498G0714384000.01	NA	OsSPL13	OsSPL13 - SBP-box gene family member, expressed	Si et al., 2016
Yield/grain size	LOC_Os07g32170	Os07g0505200	OsR498G0714383700.01	NA	OsSPL13	OsSPL13 - SBP-box gene family member, expressed	Si et al., 2016
Disease resistance	LOC_Os07g40290	Os07g0592600	OsR498G0714682600.01	NA	GH3-8	OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed	Ding et al., 2008
Yield/grain size	LOC_Os07g41200	Os07g0603300	OsR498G0714717400.01	NA	GW7	expressed protein	Wang et al., 2015b
Yield/grain size	LOC_Os07g41200	Os07g0603300	OsR498G0714717500.01	NA	GW7	expressed protein	Wang et al., 2015b
Yield	LOC_Os07g42410	Os07g0616000	OsR498G0714754700.01	NA	DEP2	expressed protein	Li et al., 2010a
NUE	LOC_Os07g48980	Os07g0689600	OsR498G0715001100.01	NA	OsNAS3	nicotianamine synthase, putative, expressed	Lee et al., 2009
Yield	LOC_Os07g49460	Os07g0695100	OsR498G0715020100.01	NA	Ghd7.1	response regulator receiver domain containing protein, expressed	Yan et al., 2013
Reproductive development	LOC_Os08g01870	Os08g0110200	OsR498G0815054900.01	NA	RF6	Rf1, mitochondrial precursor, putative, expressed	Huang et al., 2015a
Grain quality	LOC_Os08g09230	Os08g0191433	OsR498G0815345700.01	NA	SSIIIa	starch synthase III, putative, expressed	Zhou et al., 2016
Grain quality	LOC_Os08g09230	Os08g0191433	OsR498G0815345900.01	NA	SSIIIa	starch synthase III, putative, expressed	Zhou et al., 2016
Grain quality	LOC_Os08g32870	Os08g0424500	OsR498G0816109100.01	NA	Badh2	aldehyde dehydrogenase, putative, expressed	Chen et al., 2008
Disease resistance	LOC_Os08g34580	Os08g0445700	OsR498G0816196900.01	NA	Tps1	trehalose-6-phosphate synthase, putative, expressed	Wilson et al., 2010
Yield	LOC_Os08g37890	Os08g0485500	OsR498G0816341300.01	NA	GAD1	expressed protein	Jin et al., 2016
Abiotic stress	LOC_Os09g15430	Os09g0323100	OsR498G0917151800.01	NA	SUB1A	zinc finger family protein, putative, expressed	Singh and Sinha, 2016
Abiotic stress	LOC_Os09g19900	Os09g0363600	OsR498G0917252200.01	NA	DWA1	WD domain, G-beta repeat domain containing protein, expressed	Zhu and Xiong, 2013
Reproductive development	LOC_Os09g31031	Os09g0483400	OsR498G0917709100.01	NA	UbL404	ubiquitin family protein, putative, expressed	Zhou et al., 2014
Reproductive development	LOC_Os10g35240	Os10g0495200	OsR498G1018973800.01	NA	Rf4	Rf1, mitochondrial precursor, putative, expressed	Luo et al., 2013a
Reproductive development	LOC_Os10g35240	Os10g0495200	OsR498G1018975000.01	NA	Rf4	Rf1, mitochondrial precursor, putative, expressed	Luo et al., 2013a
Reproductive development	LOC_Os10g35240	Os10g0495200	OsR498G1018978200.01	NA	Rf4	Rf1, mitochondrial precursor, putative, expressed	Luo et al., 2013a
Reproductive development	LOC_Os10g35240	Os10g0495200	OsR498G1018978800.01	NA	Rf4	Rf1, mitochondrial precursor, putative, expressed	Luo et al., 2013a
Reproductive development	LOC_Os10g35240	Os10g0495200	OsR498G1018976000.01	NA	Rf4	Rf1, mitochondrial precursor, putative, expressed	Luo et al., 2013a
Reproductive development	LOC_Os10g35436	Os10g0497300	OsR498G1018983700.01	NA	RF5	Rf1, mitochondrial precursor, putative, expressed	Hu et al., 2012
Reproductive development	LOC_Os10g35436	Os10g0497300	OsR498G1018983100.01	NA	RF5	Rf1, mitochondrial precursor, putative, expressed	Hu et al., 2012
Reproductive development	LOC_Os10g35436	Os10g0497300	OsR498G1018984100.01	NA	RF5	Rf1, mitochondrial precursor, putative, expressed	Hu et al., 2012
Reproductive development	LOC_Os10g38050	Os10g0524500	OsR498G1019070300.01	NA	OsNP1	HOTHEAD precursor, putative, expressed	Chang et al., 2016
NUE	LOC_Os10g40600	Os10g0554200	OsR498G1019162400.01	NA	NRT1.1B	peptide transporter PTR2, putative, expressed	Hu et al., 2015a
Yield	LOC_Os11g01330	Os11g0104300	OsR498G1119284300.01	NA	D53	expressed protein	Jiang et al., 2013; Zhou et al., 2013
Disease resistance	LOC_Os11g30910	Os11g0505300	OsR498G1120199500.01	NA	STV11	sulfotransferase domain containing protein, expressed	Wang et al., 2014d
Disease resistance	LOC_Os11g30910	Os11g0505300	OsR498G1120198900.01	NA	STV11	sulfotransferase domain containing protein, expressed	Wang et al., 2014d
Disease resistance	LOC_Os11g35500	Os11g0559200	OsR498G1120353500.01	NA	Xa21	receptor-like protein kinase 5 precursor, putative, expressed	Park and Ronald, 2012
Disease resistance	LOC_Os12g29220	Os12g0476200	OsR498G1221587200.01	NA	Xa25	nodulin MtN3 family protein, putative, expressed	Richter et al., 2014
NUE	LOC_Os12g44150	Os12g0638700	OsR498G1222181700.01	NA	H+-ATPase	plasma membrane ATPase, putative, expressed	Wang et al., 2014a
Grain quality	LOC_Os01g10110	Os01g0197700	OsR498G0100344200.01	NA	Gn1a	cytokinin dehydrogenase precursor, putative, expressed	NA
Transcription factor	LOC_Os01g44260	Os01g0633500	OsR498G0101599900.01	NA	RD	dihydroflavonol-4-reductase, putative, expressed	NA
Disease resistance	LOC_Os11g38580	Os11g0598500	OsR498G1171011800.01	NA	Pb1	NBS-LRR type disease resistance protein, putative, expressed	NA
Disease resistance	LOC_Os01g05620	Os01g0149500	OsR498G0100178200.01	NA	PIT	NBS-LRR disease resistance protein, putative, expressed	NA
Disease resistance	LOC_Os11g11790	Os11g0225100	OsR498G1119642600.01	NA	PIA (Os11gRGA4)	NBS-LRR type disease resistance protein, putative, expressed	NA
Disease resistance	LOC_Os11g11810	Os11g0225300	OsR498G1119642700.01	NA	PIA (Os11gRGA5)	NBS-LRR disease resistance protein, putative, expressed	NA
Disease resistance	LOC_Os12g18729	Os12g0285100	OsR498G1221325200.01	NA	Pi19	expressed protein	NA
Disease resistance	LOC_Os12g18729	Os12g0285100	OsR498G1221324900.01	NA	Pi19	expressed protein	NA
Yield	LOC_Os05g26890	Os05g0333200	NA	NA	D1	G protein alpha subunit	Miura et al., 2009
Yield	LOC_Os11g37600	NA	NA	NA	D27	Iron-containing protein	Lin et al., 2009
Yield/grain size	DQ991205	NA	NA	NA	GW5	Calmodulin binding protein	Weng et al., 2008
Yield	LOC_Os07g05900	Os07g0153600	NA	NA	PROG1	ZFN transcription factor	Tan et al., 2008
Disease resistance	LOC_Os03g32230	Os03g0437200	NA	NA	Bsr-d1	ZFN transcription factor	Li et al., 2017b
Disease resistance	KU904633	NA	NA	NA	PigmR/S	Pyricularia oryzae resistance-gm	Deng et al., 2017
Disease resistance	EDK00306	NA	NA	NA	TIG1	HDAC transcriptional corepressor complex	Ding et al., 2010
Disease resistance	LOC_Os11g37620	Os11g0586701	NA	NA	Xa10	TAL effector-dependent R gene	Tian et al., 2014
Resistance to Insects	LOC_Os04g12580	Os04g0202500	NA	NA	BPH3	Lectin receptor kinase 3	Liu et al., 2015c
Resistance to Insects	LOC_Os12g37280/90	Os12g0559400	NA	NA	BPH9	Leucine-rich repeat-containing/NB-ARC protein	Zhao et al., 2016b
Resistance to Insects	LOC_Os03g63150	Os03g0848700	NA	NA	BPH14	CC-NB-LRR protein	Du et al., 2009
Abiotic stress	AB510478	NA	NA	NA	SNORKEL1	Ethylene response factor	Hattori et al., 2009
Abiotic stress	AB510479	NA	NA	NA	SNORKEL2	Ethylene response factor	Hattori et al., 2009
NUE	BAK26566	NA	NA	NA	PSTOL1	Phosphorus-starvation tolerance	Gamuyao et al., 2012
Reproductive development	DQ989628	NA	NA	NA	PMS1T	PHAS locus	Fan et al., 2016b
Reproductive development	JQ317784/JQ317785	NA	NA	NA	pms3	Photosensitive genic male sterility genes	Ding et al., 2012
Reproductive development	JX131325	NA	NA	NA	Rf3	Pollen fertility restoration-3	Luo et al., 2013a
Reproductive development	LOC_Os06g11000	NA	NA	NA	S5-ORF4	Wide compatibility gene	Yang et al., 2012
NA	NA	Os03g0407400	NA	NA	GS3	GRAIN SIZE 3	RAPDB
NA	LOC_Os01g62780	Os01g0846450	NA	NA	HESO1	a homolog of Arabidopsis thaliana HEN1 suppressor 1	RAPDB
NA	LOC_Os01g57340	Os01g0782100	NA	NA	PISH	PYRICULARIA ORYZAE RESISTANCE SH	RAPDB
NA	LOC_Os10g04010	Os10g0130000	NA	NA	RBG1	NA	RAPDB
NA	LOC_Os06g06300.1	Os06g0157500	NA	NA	RFT1	RICE FLOWERING-LOCUS T 1	RAPDB
Rice Traits

Search for biosynthetic genes related to nutritional pathways:

Pathways :

Pathways	RAPDB Gene ID	MSU Gene ID	MBKBASE Gene ID	Gene name	Gene description
Flavonoid biosynthesis related genes	Os01g0176000	LOC_Os01g08090	OsR498G0100253300.01	UGT	flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
Flavonoid biosynthesis related genes	Os01g0176000	LOC_Os01g08090	OsR498G0100253600.01	UGT	flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
Folate biosynthesis related genes	Os01g0238500	LOC_Os01g13690	OsR498G0100507700.01	ADCL	Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor
Flavonoid biosynthesis related genes	Os01g0372500	LOC_Os01g27490	OsR498G0100978400.01	LDOX	leucoanthocyanidin dioxygenase, putative, expressed
Starch biosynthesis related genes	Os01g0633100	LOC_Os01g44220	OsR498G0101598700.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Flavonoid biosynthesis related genes	Os01g0633500	LOC_Os01g44260	OsR498G0101599900.01	DFR	dihydroflavonol-4-reductase, putative, expressed
Starch biosynthesis related genes	Os01g0720600	LOC_Os01g52250	OsR498G0101909600.01	starch synthases	starch synthase, putative, expressed
Flavonoid biosynthesis related genes	Os01g0734600	LOC_Os01g53330	OsR498G0101949900.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os01g0735300	LOC_Os01g53370	OsR498G0101951500.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os01g0735300	LOC_Os01g53370	OsR498G0160979700.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os01g0736100	LOC_Os01g53430	OsR498G0101953800.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os01g0736300	LOC_Os01g53460	OsR498G0101954200.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os01g0820000	LOC_Os01g60450	OsR498G0102223200.01	C4H	cytochrome P450, putative, expressed
Flavonoid biosynthesis related genes	Os01g0832600	LOC_Os01g61610	OsR498G0102271500.01	LDOX	flavonol synthase 2Fflavanone 3-hydroxylase, putative, expressed
Starch biosynthesis related genes	Os01g0851700	LOC_Os01g63270	OsR498G0102345000.01	starch phosphorylase	alpha-glucan phosphorylast isozyme, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0177600	LOC_Os02g08100	OsR498G0203081900.01	4CL1	AMP-binding domain containing protein, expressed
Folate biosynthesis related genes	Os02g0273100	LOC_Os02g17330	OsR498G0203394100.01	ADCL	Aminotransferase, class IV family protein.
Folate biosynthesis related genes	Os02g0273100	LOC_Os02g17330	OsR498G0203395500.01	ADCL	Aminotransferase, class IV family protein.
Flavonoid biosynthesis related genes	Os02g0320300	LOC_Os02g21520	OsR498G0203562600.01	CHI	chalcone isomerase 3, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0467600	LOC_Os02g26810	OsR498G0203764700.01	C4H	cytochrome P450, putative, expressed
Flavonoid biosynthesis related genes	Os02g0483500	LOC_Os02g28170	OsR498G0203819600.01	UGT	transferase family protein, putative, expressed
Starch biosynthesis related genes	Os02g0528200	LOC_Os02g32660	OsR498G0203981600.01	Branching enzyme	1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0626100	LOC_Os02g41630	OsR498G0204353600.01	PAL2	phenylalanine ammonia-lyase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0626400	LOC_Os02g41650	OsR498G0204354400.01	PAL	phenylalanine ammonia-lyase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0626600	LOC_Os02g41670	OsR498G0204354900.01	PAL	phenylalanine ammonia-lyase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0626600	LOC_Os02g41670	OsR498G0262191000.01	PAL	phenylalanine ammonia-lyase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os02g0697400	LOC_Os02g46970	OsR498G0204592600.01	4CL3	AMP-binding domain containing protein, expressed
Starch biosynthesis related genes	Os02g0744700	LOC_Os02g51070	OsR498G0204761600.01	starch synthases	starch synthase, putative, expressed
Flavonoid biosynthesis related genes	Os02g0767300	LOC_Os02g52840	OsR498G0204832000.01	FLS4	flavonol synthase 2Fflavanone 3-hydroxylase, putative, expressed
Flavonoid biosynthesis related genes	Os02g0767300	LOC_Os02g52840	OsR498G0204832100.01	FLS4	flavonol synthase 2Fflavanone 3-hydroxylase, putative, expressed
Folate biosynthesis related genes	Os03g0111100	LOC_Os03g02030	OsR498G0305106600.01	FPGS	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
Flavonoid biosynthesis related genes	Os03g0184550	LOC_Os03g08624	OsR498G0305345700.01	DFR	dihydroflavonol-4-reductase, putative, expressed
Flavonoid biosynthesis related genes	Os03g0259400	LOC_Os03g15360	OsR498G0305612000.01	LAR	nmrA-like family domain containing protein, expressed
Flavonoid biosynthesis related genes	Os03g0289800	LOC_Os03g18030	OsR498G0305731100.01	LAR	leucoanthocyanidin dioxygenase, putative, expressed
Starch biosynthesis related genes	Os03g0735000	LOC_Os03g52460	OsR498G0307002800.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
Starch biosynthesis related genes	Os03g0758100	LOC_Os03g55090	OsR498G0307078200.01	starch phosphorylase	alpha-glucan phosphorylast isozyme, putative, expressed
Flavonoid biosynthesis related genes	Os03g0819600	LOC_Os03g60509	OsR498G0307284200.01	CHI	expressed protein
Starch biosynthesis related genes	Os04g0409200	LOC_Os04g33460	OsR498G0408518200.01	Branching enzyme	1,4-alpha-glucan-branching enzyme 2, chloroplast precursor, putative, expressed
Phenylpropanoid biosynthesis related genes	Os04g0518100	LOC_Os04g43760	OsR498G0408904400.01	PAL2	phenylalanine ammonia-lyase, putative, expressed
Phenylpropanoid biosynthesis related genes	Os04g0518400	LOC_Os04g43800	OsR498G0408906400.01	PAL	phenylalanine ammonia-lyase, putative, expressed
Flavonoid biosynthesis related genes	Os04g0581000	LOC_Os04g49194	OsR498G0409147310.01	F3H	naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
Starch biosynthesis related genes	Os04g0624600	LOC_Os04g53310	OsR498G0409312000.01	starch synthases	soluble starch synthase 3, chloroplast precursor, putative, expressed
Flavonoid biosynthesis related genes	Os04g0662600	LOC_Os04g56700	OsR498G0409435200.01	F3H	naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
Flavonoid biosynthesis related genes	Os04g0662600	LOC_Os04g56700	OsR498G0409435300.01	F3H	naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
Folate biosynthesis related genes	Os04g0662700	LOC_Os04g56710	OsR498G0409435600.01	GTPCHI	Similar to GTP cyclohydrolase 1 isoform TaA
Folate biosynthesis related genes	Os05g0244700	LOC_Os05g15530	OsR498G0510128800.01	ADCL	Aminotransferase, class IV family protein
Phenylpropanoid biosynthesis related genes	Os05g0320700	LOC_Os05g25640	OsR498G0510486800.01	C4H	cytochrome P450, putative, expressed
Starch biosynthesis related genes	Os05g0393700	LOC_Os05g32710	OsR498G0510777600.01	starch debranching enzymes	Alpha amylase, catalytic domain containing protein, expressed
Folate biosynthesis related genes	Os05g0517500	LOC_Os05g44130	OsR498G0511186000.01	GGH	Similar to Gamma-glutamyl hydrolase precursor
Flavonoid biosynthesis related genes	Os05g0527000	LOC_Os05g45100	OsR498G0511218600.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os05g0527600	LOC_Os05g45150	OsR498G0511221000.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os05g0527800	LOC_Os05g45180	OsR498G0565737000.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Starch biosynthesis related genes	Os05g0533600	LOC_Os05g45720	OsR498G0511243300.01	starch synthases	starch synthase, putative, expressed
Starch biosynthesis related genes	Os05g0580000	LOC_Os05g50380	OsR498G0511403400.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Starch biosynthesis related genes	Os06g0133000	LOC_Os06g04200	OsR498G0611577100.01	starch synthases-amylose	starch synthase, putative, expressed
Starch biosynthesis related genes	Os06g0160700	LOC_Os06g06560	OsR498G0611665000.01	starch synthases	starch synthase, putative, expressed
Flavonoid biosynthesis related genes	Os06g0176650	LOC_Os06g07923	OsR498G0611713900.01	LDOX	expressed protein
Flavonoid biosynthesis related genes	Os06g0176500	LOC_Os06g07923	OsR498G0611713900.01	LDOX	expressed protein
Flavonoid biosynthesis related genes	Os06g0176600	LOC_Os06g07923	OsR498G0611713900.01	LDOX	expressed protein
Flavonoid biosynthesis related genes	Os06g0192100	LOC_Os06g09240	OsR498G0611758700.01	UGT	anthocyanidin 3-O-glucosyltransferase, putative, expressed
Starch biosynthesis related genes	Os06g0195150	LOC_Os06g09450	OsR498G0611772600.01	starch synthases	sucrose synthase, putative, expressed
Starch biosynthesis related genes	Os06g0194900	LOC_Os06g09450	OsR498G0611772600.01	starch synthases	sucrose synthase, putative, expressed
Starch biosynthesis related genes	Os06g0229800	LOC_Os06g12450	OsR498G0611935700.01	starch synthases	soluble starch synthase 2-3, chloroplast precursor, putative, expressed
Starch biosynthesis related genes	Os06g0229800	LOC_Os06g12450	OsR498G0611936000.01	starch synthases	soluble starch synthase 2-3, chloroplast precursor, putative, expressed
Flavonoid biosynthesis related genes	Os06g0288300	LOC_Os06g18010	OsR498G0612167300.01	UGT	UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Flavonoid biosynthesis related genes	Os06g0343600	LOC_Os06g23560	OsR498G0612523700.01	UGT	anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
Starch biosynthesis related genes	Os06g0367100	LOC_Os06g26234	OsR498G0612442200.01	Branching enzyme	1,4-alpha-glucan-branching enzyme, putative, expressed
Phenylpropanoid biosynthesis related genes	Os06g0656500	LOC_Os06g44620	OsR498G0613092000.01	4CL2	AMP-binding domain containing protein, expressed
Folate biosynthesis related genes	Os06g0699700	LOC_Os06g48620	OsR498G0613250700.01	ADCS	Similar to Aminodeoxychorismate synthase/glutamine amidotransferase
Starch biosynthesis related genes	Os06g0726400	LOC_Os06g51084	OsR498G0613332800.01	Branching enzyme	1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Flavonoid biosynthesis related genes	Os07g0148200	LOC_Os07g05420	OsR498G0713512500.01	LDOX	anthocyanidin 3-O-glucosyltransferase, putative, expressed
Flavonoid biosynthesis related genes	Os07g0211500	LOC_Os07g11020	OsR498G0713747700.01	Rc	rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed
Flavonoid biosynthesis related genes	Os07g0214900	LOC_Os07g11440	OsR498G0713765800.01	CHS	chalcone synthase, putative, expressed
Starch biosynthesis related genes	Os07g0243200	LOC_Os07g13980	OsR498G0713869000.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
Flavonoid biosynthesis related genes	Os07g0271500	LOC_Os07g17010	OsR498G0713970500.01	CHS	chalcone synthase, putative, expressed
Starch biosynthesis related genes	Os07g0412100	LOC_Os07g22930	OsR498G0714096400.01	starch synthases-amylose	starch synthase, putative, expressed
Flavonoid biosynthesis related genes	Os07g0501100	LOC_Os07g31770	OsR498G0714371600.01	CHS	chalcone synthase, putative, expressed
Flavonoid biosynthesis related genes	Os07g0525500	LOC_Os07g34140	OsR498G0714468400.01	CHS	chalcone synthase, putative, expressed
Folate biosynthesis related genes	Os07g0618500	LOC_Os07g42632	OsR498G0714763700.01	DHPS/HPPK	Similar to HPPK/DHPS
Starch biosynthesis related genes	Os08g0187800	LOC_Os08g08840	OsR498G0815333700.01	GPT1	phosphate%2Fphosphate translocator, putative, expressed
Starch biosynthesis related genes	Os08g0191433	LOC_Os08g09230	OsR498G0815345700.01	starch synthases	starch synthase III, putative, expressed
Starch biosynthesis related genes	Os08g0191433	LOC_Os08g09230	OsR498G0815345900.01	starch synthases	starch synthase III, putative, expressed
Phenylpropanoid biosynthesis related genes	Os08g0245200	LOC_Os08g14760	OsR498G0815527100.01	4CL1	AMP-binding domain containing protein, expressed
Starch biosynthesis related genes	Os08g0345800	LOC_Os08g25734	OsR498G0815850400.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Phenylpropanoid biosynthesis related genes	Os08g0448000	LOC_Os08g34790	OsR498G0816205800.01	4CL5	AMP-binding domain containing protein, expressed
Starch biosynthesis related genes	Os08g0520900	LOC_Os08g40930	OsR498G0816481400.01	starch debranching enzymes	Alpha amylase, catalytic domain containing protein, expressed
Folate biosynthesis related genes	Os08g0556200	LOC_Os08g44210	OsR498G0816597300.01	DHNA	Similar to Dihydroneopterin aldolase
Folate biosynthesis related genes	Os08g0556200	LOC_Os08g44210	OsR498G0816597600.01	DHNA	Similar to Dihydroneopterin aldolase
Starch biosynthesis related genes	Os09g0298200	LOC_Os09g12660	OsR498G0917015400.01	AGPASE	glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Starch biosynthesis related genes	Os09g0469400	LOC_Os09g29404	OsR498G0917656000.01	starch debranching enzymes	glycogen operon protein glgX, putative, expressed
Starch biosynthesis related genes	Os10g0189100	LOC_Os10g11140	OsR498G1018314600.01	starch synthases	phosphoglucomutase, putative, expressed
Flavonoid biosynthesis related genes	Os10g0320100	LOC_Os10g17260	OsR498G1018427100.01	F3'H	cytochrome P450, putative, expressed
Starch biosynthesis related genes	Os10g0437600	LOC_Os10g30156	OsR498G1018786300.01	starch synthases	starch synthase, putative, expressed
Folate biosynthesis related genes	Os10g0503200	LOC_Os10g35940	OsR498G1019001800.01	FPGS	Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.
Flavonoid biosynthesis related genes	Os10g0536400	LOC_Os10g39140	OsR498G1019102500.01	F3H	flavonol synthase 2Fflavanone 3-hydroxylase, putative, expressed
Folate biosynthesis related genes	Os11g0484400	LOC_Os11g29390	OsR498G1120152500.01	DHFR	Similar to bifunctional dihydrofolate reductase-thymidylate synthase
Flavonoid biosynthesis related genes	Os11g0530600	LOC_Os11g32650	OsR498G1120269200.01	CHS	chalcone synthase, putative, expressed
Flavonoid biosynthesis related genes	Os11g0530600	LOC_Os11g32650	OsR498G1120269300.01	CHS	chalcone synthase, putative, expressed
Flavonoid biosynthesis related genes	Os11g0599200	LOC_Os11g38650	OsR498G1120454800.01	UGT	UDP-glucoronosyl 2FUDP-glucosyl transferase, putative, expressed
Flavonoid biosynthesis related genes	Os11g0599200	LOC_Os11g38650	OsR498G1120454900.01	UGT	UDP-glucoronosyl 2FUDP-glucosyl transferase, putative, expressed
Flavonoid biosynthesis related genes	Os11g0599200	LOC_Os11g38650	OsR498G1120455100.01	UGT	UDP-glucoronosyl 2FUDP-glucosyl transferase, putative, expressed
Folate biosynthesis related genes	Os12g0446900	LOC_Os12g26060	OsR498G1221506900.01	DHFR	Similar to bifunctional dihydrofolate reductase-thymidylate synthase
Folate biosynthesis related genes	None	LOC_Os12g42870	OsR498G1222137800.01	DHFS	Similar to GLA1
Folate biosynthesis related genes	Os12g0623800	LOC_Os12g42870	OsR498G1222137800.01	DHFS	Similar to GLA1
Pathways