Agri-SNPs – MyRiceBase

Search for SNPs in expressed genes related to agronomic traits:

Traits :

Class :

SNP effect :

Traits	Class	Gene ID	SNP ID	Chr	Pos	Allele	SNP effect	Gene name	Gene description	Bali	PH9	MRM16	MRQ100	MR297	MRQ76
drawf	Agronomical	Os01g0286900	chr01_10312516	chr01	10,312,516	G/A	5_prime_UTR_variant	OsIAA4,IAA4	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	GG	GG	GA	GA	GA	GA
lodging drawf	Abiotic Stress	Os01g0286900	chr01_10312516	chr01	10,312,516	G/A	5_prime_UTR_variant	OsIAA4,IAA4	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	GG	GG	GA	GA	GA	GA
absisic acid	Biochemical	Os01g0286900	chr01_10312516	chr01	10,312,516	G/A	5_prime_UTR_variant	OsIAA4,IAA4	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	GG	GG	GA	GA	GA	GA
grain protein (nutrient)	Quality	Os01g0338000	chr01_13287115	chr01	13,287,115	G/T	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	GG	GG	GT	GG	GG	GG
endosperm	Morphology	Os01g0338000	chr01_13287115	chr01	13,287,115	G/T	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	GG	GG	GT	GG	GG	GG
grain	Agronomical	Os01g0338000	chr01_13287115	chr01	13,287,115	G/T	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	GG	GG	GT	GG	GG	GG
endosperm	Morphology	Os01g0338000	chr01_13287741	chr01	13,287,741	A/G	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	AA	AA	AG	AA	AA	AA
grain	Agronomical	Os01g0338000	chr01_13287741	chr01	13,287,741	A/G	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	AA	AA	AG	AA	AA	AA
grain protein (nutrient)	Quality	Os01g0338000	chr01_13287741	chr01	13,287,741	A/G	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	AA	AA	AG	AA	AA	AA
grain	Agronomical	Os01g0338000	chr01_13287794	chr01	13,287,794	T/C	intron_variant	Sar1b,OsSar1a,ARL1e,Sar1a,OsARL1e	Similar to GTP-binding protein SAR1A.	TT	TT	TT	TC	TT	TT
Traits	Class						SNP effect