Search for differentially expressed genes (DEGs)
*BW= black rice vs white rice
*BR= black rice vs red rice
*RW= red rice vs white rice
| Pathway | Treatment | FDR | Gene ID | Gene description | Enzyme code |
|---|---|---|---|---|---|
| NA | BR | 9.44 | Novel00015 | NA | NA |
| NA | RW | -2.97 | Novel00056 | NA | NA |
| NA | BR | -2.95 | Novel00090 | zinc-binding in reverse transcriptase | NA |
| NA | BR | 10.03 | Novel00091 | NA | |
| NA | BW | 6.01 | Novel00098 | NA | NA |
| NA | RW | 2.79 | Novel00129 | NA | |
| NA | BR | -2.65 | Novel00132 | NA | |
| NA | BR | -4.22 | Novel00133 | NA | |
| NA | RW | 3.60 | Novel00134 | ATP synthesis coupled proton transport | NA |
| NA | BW | 2.76 | Novel00156 | Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids | NA |
| NA | BW | 6.31 | Novel00207 | NA | NA |
| NA | BW | -7.84 | Novel00258 | NA | NA |
| NA | RW | -1.98 | Novel00308 | NA | NA |
| NA | BW | -2.69 | Novel00314 | NA | NA |
| NA | BW | 2.38 | Novel00344 | ADP binding | NA |
| NA | BW | -2.84 | Novel00381 | NA | |
| NA | BW | 2.68 | Novel00400 | NA | NA |
| NA | BW | -2.52 | Novel00486 | NA | NA |
| NA | BR | 6.28 | Novel00490 | tRNA (adenine(58)-N(1))-methyltransferase | NA |
| NA | BW | -6.39 | Novel00499 | NA | NA |
| NA | BW | -2.55 | Novel00521 | Thioesterase-like superfamily | NA |
| NA | BR | 13.65 | Novel00523 | NA | NA |
| NA | BR | 5.64 | Novel00537 | nuclease activity | NA |
| NA | BW | 2.20 | Novel00599 | NA | |
| NA | RW | -2.46 | Novel00692 | NA | |
| NA | BW | -3.64 | Novel00697 | Myb/SANT-like DNA-binding domain | NA |
| NA | BW | -3.08 | Novel00739 | NA | NA |
| NA | BW | 2.60 | Novel00770 | NA | |
| NA | BW | 3.16 | Novel00804 | NA | NA |
| NA | RW | -2.72 | Novel00824 | Plastocyanin-like domain | NA |
| NA | BW | 3.92 | Novel00850 | NA | NA |
| NA | RW | 4.11 | Novel00894 | NA | NA |
| NA | BW | 4.53 | Novel00912 | transposition, RNA-mediated | NA |
| NA | BR | 3.53 | Novel00946 | DNA binding domain | NA |
| NA | RW | -3.71 | Novel00953 | NA | NA |
| NA | BW | 2.56 | Novel01036 | NA | NA |
| NA | RW | -2.14 | Novel01072 | NA | NA |
| NA | BW | -3.73 | Novel01193 | NA | NA |
| NA | RW | 2.10 | Os01g0104000 | hypothetical protein OsI_00035 | NA |
| NA | BW | 3.79 | Os01g0110800 | Leucine-rich repeat, plant specific containing protein. | NA |
| NA | BR | -3.70 | Os01g0111600 | PEBP (phosphatidylethanolamine-binding protein) family protein, Regulation of ABA signaling-mediated seed germination | NA |
| NA | RW | -2.91 | Os01g0119000 | hypothetical protein OsJ_00165 | NA |
| NA | RW | -3.33 | Os01g0132000 | Bowman-Birk type wound-induced proteinase inhibitor WIP1 | NA |
| NA | RW | -2.34 | Os01g0135700 | probable calcium-binding protein CML16 | NA |
| NA | RW | -2.63 | Os01g0136200 | 16.9 kDa heat shock protein | NA |
| NA | RW | -2.49 | Os01g0136600 | Conserved hypothetical protein. | NA |
| NA | BR | 5.41 | Os01g0138400 | hypothetical protein OsJ_00300 | NA |
| NA | RW | -2.69 | Os01g0175850 | UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein. | NA |
| NA | RW | -2.81 | Os01g0179600 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | NA |
| NA | RW | -2.41 | Os01g0211600 | sterol C-22 desaturase -like | NA |
| NA | RW | -1.83 | Os01g0225000 | hypothetical protein OsI_00966 | NA |
| NA | RW | 2.42 | Os01g0235400 | putative importin-alpha re-exporter | NA |
| NA | RW | -3.22 | Os01g0246400 | high molecular mass early light-inducible protein HV58, chloroplastic | NA |
| NA | RW | -3.09 | Os01g0248500 | Similar to Pathogen-related protein. | NA |
| NA | BW | 2.93 | Os01g0259400 | putative FUSED serine/threonine kinase | NA |
| NA | BW | 4.76 | Os01g0259900 | Conserved hypothetical protein. | NA |
| NA | BW | -2.30 | Os01g0262500 | TRAM/LAG1/CLN8 homology domain domain containing protein. | NA |
| NA | BR | -4.27 | Os01g0280400 | putative DNA-binding protein | NA |
| NA | BW | 2.23 | Os01g0281000 | Cyclin-like F-box domain containing protein. | NA |
| NA | BW | 4.12 | Os01g0283300 | Conserved hypothetical protein. | NA |
| NA | BR | 3.33 | Os01g0284500 | germin-like protein 1-1 | NA |
| Amino sugar and nucleotide sugar metabolism | BR | 3.96 | Os01g0303100 | acidic endochitinase SE2 | ec:3.2.1.14 |
| NA | BW | 6.22 | Os01g0310600 | Non-protein coding transcript. | NA |
| NA | BW | 5.40 | Os01g0323950 | Similar to Glycine-rich protein 2b. | NA |
| NA | BR | -4.45 | Os01g0327900 | Hypothetical conserved gene. | NA |
| NA | RW | 2.04 | Os01g0329800 | hypothetical protein OsJ_01571 | NA |
| NA | BW | 2.11 | Os01g0337900 | Similar to Dihydrolipoamide dehydrogenase. | NA |
| NA | BW | 5.12 | Os01g0353900 | Similar to cDNA clone:J023055K12, full insert sequence.;Conserved hypothetical protein. | NA |
| Thiamine metabolism | BW | -3.35 | Os01g0363600 | hydroxyethylthiazole kinase | ec:2.7.1.50 |
| NA | RW | -3.25 | Os01g0376600 | Hypothetical conserved gene. | NA |
| NA | BR | 9.02 | Os01g0386600 | hypothetical protein EE612_002790 | NA |
| NA | BW | -2.62 | Os01g0387566 | Conserved hypothetical protein. | NA |
| NA | BR | 4.36 | Os01g0392600 | Os01g0392600 | NA |
| NA | BR | 5.70 | Os01g0498802 | Non-protein coding transcript. | NA |
| NA | BW | 3.06 | Os01g0511600 | hypothetical protein EE612_002997 | NA |
| NA | RW | 2.25 | Os01g0512200 | AP-3 complex subunit delta | NA |
| NA | BR | 5.61 | Os01g0523000 | Hypothetical gene. | NA |
| NA | BR | 5.69 | Os01g0530100 | Conserved hypothetical protein. | NA |
| NA | BR | 4.73 | Os01g0553400 | Cyclin-like F-box domain containing protein. | NA |
| Pyrimidine metabolism | RW | 2.22 | Os01g0570700 | hypothetical protein EE612_003577, partial | ec:6.3.5.5 |
| Alanine, aspartate and glutamate metabolism | RW | 2.22 | Os01g0570700 | hypothetical protein EE612_003577, partial | ec:6.3.5.5 |
| NA | BR | 3.33 | Os01g0580300 | Conserved hypothetical protein. | NA |
| NA | BR | 4.00 | Os01g0580400 | Histone-fold domain containing protein. | NA |
| NA | BR | 6.03 | Os01g0602600 | hypothetical protein EE612_003917, partial | NA |
| NA | RW | 2.13 | Os01g0612700 | protein LOL5 | NA |
| NA | BW | -3.41 | Os01g0618300 | BLE2 protein-like | NA |
| NA | RW | -2.84 | Os01g0637800 | Os01g0637800, partial | NA |
| NA | BR | 4.00 | Os01g0638000 | glucosyltransferase IS5a-like | NA |
| NA | RW | -2.35 | Os01g0639600 | Protein of unknown function DUF1645 family protein. | NA |
| NA | RW | -2.15 | Os01g0652800 | protein trichome birefringence-like 19 | NA |
| NA | BW | -4.07 | Os01g0661750 | Hypothetical conserved gene. | NA |
| NA | RW | 2.01 | Os01g0672800 | Protein of unknown function DUF1421 domain containing protein. | NA |
| NA | RW | 2.45 | Os01g0682200 | Os01g0682200 | NA |
| NA | RW | -2.53 | Os01g0699400 | mitogen-activated protein kinase kinase kinase 18 | NA |
| NA | RW | 2.23 | Os01g0714100 | Conserved hypothetical protein. | NA |
| NA | RW | -2.27 | Os01g0719400 | glycine-rich protein-like | NA |
| NA | BW | -2.96 | Os01g0726400 | MADS-box transcription factor 32 isoform X1 | NA |
| NA | RW | -2.25 | Os01g0727500 | A member of S40 gene family, Leaf senescence | NA |
| NA | RW | -2.73 | Os01g0738400 | zing finger transcription factor PEI1-like | NA |
| NA | BW | 3.16 | Os01g0748950 | Nitrate transporter of the NRT1/NPF family, Arbuscular mycorrhizal (AM)-induced nitrate transporter, Mycorrhizal nitrate acquisition, Symbiotic nitrogen uptake | NA |
| NA | BW | -2.66 | Os01g0749000 | Protein of unknown function DUF1264 family protein. | NA |
| NA | RW | -2.18 | Os01g0752500 | putative ethylene responsive protein | NA |
| Starch and sucrose metabolism | RW | 2.02 | Os01g0754200 | callose synthase 12 | ec:2.4.1.34 |
| NA | RW | -2.01 | Os01g0802600 | Similar to Circadian clock coupling factor ZGT. | NA |
| NA | BW | -3.74 | Os01g0821600 | WRKY transcription factor 48-like protein | NA |
| NA | RW | -1.91 | Os01g0840100 | probable mediator of RNA polymerase II transcription subunit 37c | NA |
| NA | RW | -2.36 | Os01g0847800 | hypothetical protein OsI_04429 | NA |
| NA | RW | -3.53 | Os01g0865400 | putative UDP-rhamnose:rhamnosyltransferase 1 | NA |
| NA | BW | -2.18 | Os01g0869800 | RecName: Full=Photosystem II 22 kDa protein 1, chloroplastic; Short=22 kDa protein of photosystem II 1; AltName: Full=Photosystem II subunit 1; Short=OsPsbS1; Flags: Precursor | NA |
| NA | BW | 2.44 | Os01g0874700 | GOLD domain containing protein.;Similar to patellin-1. | NA |
| NA | BW | 4.54 | Os01g0902800 | hypothetical protein OsI_04821 | NA |
| NA | BW | -3.77 | Os01g0924200 | uncharacterized protein LOC4327259 | NA |
| NA | RW | -2.74 | Os01g0930900 | putative tropinone reductase homolog | NA |
| NA | RW | -3.09 | Os01g0930950 | NAD(P)-binding domain domain containing protein. | NA |
| Glutathione metabolism | RW | -2.83 | Os01g0933900 | glutathione S-transferase 3 | ec:2.5.1.18 |
| Drug metabolism - other enzymes | RW | -2.83 | Os01g0933900 | glutathione S-transferase 3 | ec:2.5.1.18 |
| Drug metabolism - cytochrome P450 | RW | -2.83 | Os01g0933900 | glutathione S-transferase 3 | ec:2.5.1.18 |
| Metabolism of xenobiotics by cytochrome P450 | RW | -2.83 | Os01g0933900 | glutathione S-transferase 3 | ec:2.5.1.18 |
| NA | RW | -4.90 | Os01g0944800 | hypothetical protein EE612_007923, partial | NA |
| NA | RW | 1.80 | Os02g0114000 | hypothetical protein EE612_008406, partial | NA |
| NA | BW | 2.36 | Os02g0122800 | Similar to Arginine/serine-rich splicing factor.;Nucleotide-binding, alpha-beta plait domain containing protein. | NA |
| NA | BR | 4.60 | Os02g0125400 | hypothetical protein OsJ_05204 | NA |
| NA | RW | 2.47 | Os02g0137400 | putative splicing factor 3b, subunit 3, 130kDa | NA |
| NA | RW | 2.32 | Os02g0146400 | Core splicing factor, Spliceosomal protein;Similar to predicted protein. | NA |
| NA | BW | 5.95 | Os02g0152300 | Serine/threonine protein kinase-related domain containing protein. | NA |
| NA | RW | -2.11 | Os02g0156100 | Conserved hypothetical protein. | NA |
| NA | BR | 2.46 | Os02g0161800 | Similar to Peroxidase precursor (EC 1.11.1.7). | NA |
| NA | RW | -2.33 | Os02g0177700 | CASP-like protein 2C2 | NA |
| NA | RW | -2.66 | Os02g0178800 | Glossy1(GL1) homolog, Cuticular wax biosynthesis, Drought resistance | NA |
| NA | RW | -2.35 | Os02g0188000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | NA |
| NA | BW | -3.10 | Os02g0192700 | putative thioredoxin peroxidase | NA |
| NA | RW | -3.61 | Os02g0199300 | Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein. | NA |
| NA | RW | 2.24 | Os02g0200800 | protein WVD2-like 5 | NA |
| NA | BR | 2.57 | Os02g0216300 | hypothetical protein EE612_009774 | NA |
| NA | RW | 1.87 | Os02g0218200 | Peptidase M1, membrane alanine aminopeptidase family protein.;Similar to APM1 (AMINOPEPTIDASE M1). | NA |
| NA | BW | -2.40 | Os02g0236800 | putative bacterial-induced peroxidase precursor | NA |
| NA | BW | -2.97 | Os02g0248200 | hypothetical protein OsI_06558 | NA |
| NA | BW | 7.17 | Os02g0257100 | basic blue protein | NA |
| NA | BW | 6.26 | Os02g0257200 | hypothetical protein OsJ_06133 | NA |
| NA | BW | -2.93 | Os02g0260400 | Protein of unknown function DUF37 family protein. | NA |
| NA | BR | -2.51 | Os02g0268300 | glutelin type-B 5 | NA |
| NA | BW | 4.28 | Os02g0285900 | hypothetical protein DAI22_02g126800 | NA |
| NA | BW | 6.76 | Os02g0289700 | hypothetical protein DAI22_02g129000 | NA |
| NA | RW | 2.01 | Os02g0301500 | Similar to ATP dependent RNA helicase. | NA |
| NA | RW | -2.19 | Os02g0302200 | putative gag and pol protein | NA |
| NA | BW | -2.86 | Os02g0332450 | Hypothetical conserved gene. | NA |
| NA | RW | 2.42 | Os02g0456800 | putative disease resistance RPP13-like protein 1 | NA |
| NA | BW | 5.23 | Os02g0467200 | Hypothetical protein. | NA |
| NA | RW | -2.39 | Os02g0513100 | bidirectional sugar transporter SWEET15 | NA |
| NA | RW | -1.86 | Os02g0532300 | hydrolase, alpha/beta fold protein-like | NA |
| NA | RW | -2.22 | Os02g0537000 | pectinesterase inhibitor 8 | NA |
| NA | RW | -3.67 | Os02g0540700 | U-box domain-containing protein 27 | NA |
| NA | RW | -1.70 | Os02g0567800 | tuliposide A-converting enzyme 2, chloroplastic | NA |
| Diterpenoid biosynthesis | RW | -6.06 | Os02g0569000 | cytochrome P450 76M5 | ec:1.14.14.122 |
| NA | RW | -3.05 | Os02g0597200 | Conserved hypothetical protein. | NA |
| NA | BW | 3.92 | Os02g0599151 | Probable protein phosphatase 2C 17. | NA |
| NA | BW | 7.11 | Os02g0599500 | Similar to Iron-stress related protein. | NA |
| Amino sugar and nucleotide sugar metabolism | RW | -3.02 | Os02g0605900 | chitinase 6 | ec:3.2.1.14 |
| NA | RW | -2.82 | Os02g0607700 | Short-chain dehydrogenase/reductase SDR domain containing protein. | NA |
| NA | RW | -1.96 | Os02g0610500 | zinc finger protein CONSTANS-LIKE 3 | NA |
| NA | RW | -2.82 | Os02g0611800 | hydroxycinnamoyltransferase 2 | NA |
| NA | RW | -1.89 | Os02g0625300 | Os02g0625300 | NA |
| NA | BR | 3.76 | Os02g0634700 | hypothetical protein E2562_005730 | NA |
| NA | BR | 2.67 | Os02g0638650 | AP2 domain-containing transcription factor-like | NA |
| NA | BR | 3.34 | Os02g0639300 | Conserved hypothetical protein. | NA |
| NA | BW | 4.24 | Os02g0656600 | ethylene-responsive transcription factor TINY | NA |
| NA | BW | -2.67 | Os02g0672500 | hypothetical protein EE612_012951, partial | NA |
| Terpenoid backbone biosynthesis | BW | -2.61 | Os02g0680600 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic | ec:4.6.1.12 |
| NA | BW | -3.26 | Os02g0705100 | Alpha/beta hydrolase fold-1 domain containing protein. | NA |
| NA | RW | -5.25 | Os02g0711300 | Heat shock protein Hsp20 domain containing protein. | NA |
| NA | BR | 2.77 | Os02g0716800 | TGF-beta receptor, type I/II extracellular region family protein. | NA |
| NA | BR | 3.52 | Os02g0731300 | Non-protein coding transcript. | NA |
| NA | RW | -2.82 | Os02g0739400 | probable galacturonosyltransferase-like 9 | NA |
| NA | RW | -1.89 | Os02g0740600 | Conserved hypothetical protein. | NA |
| NA | RW | -2.90 | Os02g0740700 | metalloendoproteinase 2-MMP | NA |
| NA | RW | 1.90 | Os02g0742100 | hypothetical protein OsJ_08341 | NA |
| NA | RW | -2.80 | Os02g0758000 | Similar to Low molecular weight heat shock protein precursor (Mitochondrial small heat shock protein 22). | NA |
| NA | RW | -4.86 | Os02g0759400 | RING/C3HC4/PHD zinc finger-like protein | NA |
| NA | RW | 1.74 | Os02g0759800 | SNW/SKI-interacting protein A-like | NA |
| NA | BW | -2.67 | Os02g0767600 | zinc finger -like | NA |
| NA | RW | -4.03 | Os02g0773200 | UspA domain containing protein. | NA |
| NA | BW | 2.30 | Os02g0788800 | hypothetical protein EJB05_20386, partial | NA |
| NA | BW | -3.12 | Os02g0796600 | Esterase/lipase/thioesterase domain containing protein. | NA |
| NA | RW | -2.08 | Os02g0802301 | Hypothetical conserved gene. | NA |
| NA | BR | -3.32 | Os02g0806000 | hypothetical protein OsI_09351 | NA |
| NA | RW | -1.83 | Os02g0807000 | hypothetical protein OsI_09360 | NA |
| NA | BR | 2.90 | Os02g0811400 | Similar to Cinnamoyl CoA reductase. | NA |
| NA | RW | -2.73 | Os02g0814000 | desumoylating isopeptidase 1 | NA |
| NA | RW | -1.80 | Os02g0823100 | aquaporin PIP 1-3 | NA |
| NA | BW | -2.75 | Os02g0828500 | Tetratricopeptide-like helical domain containing protein. | NA |
| NA | BW | 6.33 | Os02g0832150 | Os02g0832150 | NA |
| NA | BW | -2.42 | Os03g0115000 | Os03g0115000, partial | NA |
| NA | RW | 1.89 | Os03g0130500 | epidermal growth factor receptor substrate 15 | NA |
| NA | RW | 1.93 | Os03g0137400 | CSC1-like protein At4g35870 | NA |
| NA | RW | -2.90 | Os03g0152000 | hypothetical protein OsI_10051 | NA |
| NA | BW | -3.03 | Os03g0164300 | Os03g0164300, partial | NA |
| NA | BW | 2.99 | Os03g0167500 | Splicing isoform of OsRMR1;Receptor-like membrane Ring-H2 (RMR) protein, Sorting receptor in transporting vicilin-like storage proteins | NA |
| NA | RW | -2.35 | Os03g0173900 | E3 ubiquitin-protein ligase BIG BROTHER isoform X2 | NA |
| NA | BR | 2.67 | Os03g0180900 | protein TIFY 11c | NA |
| NA | RW | -2.18 | Os03g0194900 | cytochrome b561 and DOMON domain-containing protein At3g25290 | NA |
| NA | RW | -2.80 | Os03g0218400 | hypothetical protein OsJ_09938 | NA |
| NA | BW | -3.54 | Os03g0222100 | MA3 domain-containing protein, putative, expressed | NA |
| NA | BW | -2.60 | Os03g0226200 | hemoglobin 2 | NA |
| NA | BW | 4.86 | Os03g0231000 | Conserved hypothetical protein. | NA |
| NA | BW | 4.08 | Os03g0231150 | Hox19, partial | NA |
| NA | BW | 10.37 | Os03g0231400 | Hypothetical protein. | NA |
| NA | RW | -2.59 | Os03g0237500 | protein OPI10 homolog | NA |
| NA | RW | -2.33 | Os03g0245800 | Similar to Heat shock protein 26. | NA |
| NA | RW | 2.08 | Os03g0246800 | brefeldin A-inhibited guanine nucleotide-exchange protein 2 | NA |
| NA | RW | 2.13 | Os03g0255000 | Os03g0255000, partial | NA |
| NA | BW | -2.89 | Os03g0259900 | Protein of unknown function DUF593 family protein. | NA |
| NA | RW | -2.13 | Os03g0263700 | hypothetical protein | NA |
| NA | RW | -1.68 | Os03g0266300 | 17.9 kDa class I heat shock protein | NA |
| NA | RW | -3.58 | Os03g0266900 | 17.4 kDa class I heat shock protein | NA |
| NA | RW | -2.62 | Os03g0276500 | heat shock cognate 70 kDa protein 2 | NA |
| NA | RW | -2.11 | Os03g0277500 | Similar to Glyoxalase family protein, expressed. | NA |
| NA | RW | -2.06 | Os03g0292100 | probable protein phosphatase 2C 32 | NA |
| NA | RW | -2.27 | Os03g0299600 | Wound-induced protein, Wun1 domain containing protein. | NA |
| NA | RW | -2.82 | Os03g0300400 | hypothetical protein GQ55_9G507000 | NA |
| NA | RW | -2.40 | Os03g0309000 | FIP1[III]-like protein precursor | NA |
| NA | RW | -1.95 | Os03g0316200 | galactinol synthase 1 | NA |
| NA | RW | -2.15 | Os03g0322200 | Similar to serine-rich protein-related. | NA |
| Porphyrin and chlorophyll metabolism | RW | 2.26 | Os03g0323200 | Os03g0323200, partial | ec:6.6.1.1 |
| NA | RW | 1.83 | Os03g0324300 | ETHYLENE INSENSITIVE 3-like 1 protein | NA |
| NA | RW | -1.90 | Os03g0324900 | hypothetical protein OsI_11376 | NA |
| NA | BW | 3.78 | Os03g0346150 | NA | NA |
| NA | BW | 2.62 | Os03g0354500 | retrotransposon protein, putative, unclassified | NA |
| NA | RW | 1.81 | Os03g0387000 | unnamed protein product | NA |
| NA | RW | 2.63 | Os03g0395600 | Conserved hypothetical protein. | NA |
| NA | BR | 7.16 | Os03g0400600 | Conserved hypothetical protein. | NA |
| NA | BW | -3.52 | Os03g0415200 | Similar to MAP3K protein kinase-like protein. | NA |
| NA | RW | 2.27 | Os03g0427100 | RING finger protein 222 | NA |
| NA | BW | -2.91 | Os03g0439000 | Conserved hypothetical protein. | NA |
| NA | BW | -3.37 | Os03g0556600 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 | NA |
| NA | RW | -2.43 | Os03g0558700 | Conserved hypothetical protein. | NA |
| NA | BW | 2.54 | Os03g0601100 | Protein of unknown function DUF295 domain containing protein. | NA |
| NA | BW | -5.21 | Os03g0609500 | LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein, Transcriptional activator, Regulation of heading date and yield | NA |
| NA | BR | 5.55 | Os03g0619600 | B3 domain-containing protein Os03g0619600 | NA |
| NA | RW | 1.93 | Os03g0655600 | MULE transposase, conserved domain domain containing protein.;Hypothetical conserved gene. | NA |
| NA | RW | -3.80 | Os03g0661600 | hypothetical protein EE612_019448, partial | NA |
| NA | RW | -3.56 | Os03g0663400 | protein P21 | NA |
| NA | RW | 2.39 | Os03g0666100 | hypothetical protein EE612_019504, partial | NA |
| NA | BW | 2.23 | Os03g0681800 | hypothetical protein EJB05_05188 | NA |
| NA | BW | 2.94 | Os03g0689400 | putative nucleotide-binding leucine-rich-repeat protein | NA |
| NA | RW | -2.03 | Os03g0691400 | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 | NA |
| NA | RW | -1.94 | Os03g0701100 | hypothetical protein EE612_019882, partial | NA |
| NA | BR | 2.65 | Os03g0707200 | Os03g0707200 | NA |
| NA | BR | 6.44 | Os03g0710500 | hypothetical protein E2562_001424 | NA |
| NA | RW | 2.73 | Os03g0711400 | coatomer subunit alpha-1 | NA |
| NA | RW | 2.78 | Os03g0711500 | coatomer subunit alpha-2 | NA |
| NA | RW | 2.00 | Os03g0719800 | phytochrome A | NA |
| NA | RW | -2.41 | Os03g0734100 | Conserved hypothetical protein. | NA |
| NA | RW | -2.33 | Os03g0736900 | Similar to Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848. | NA |
| alpha-Linolenic acid metabolism | RW | -3.05 | Os03g0738600 | linoleate 9S-lipoxygenase 2 | ec:1.13.11.12;ec:1.13.11.58 |
| Linoleic acid metabolism | RW | -3.05 | Os03g0738600 | linoleate 9S-lipoxygenase 2 | ec:1.13.11.12;ec:1.13.11.58 |
| NA | BR | 3.41 | Os03g0745000 | heat stress transcription factor A-2a | NA |
| NA | RW | -2.45 | Os03g0745600 | protein LIFEGUARD 2 | NA |
| NA | RW | 2.22 | Os03g0752100 | phytochrome C | NA |
| NA | BW | 7.00 | Os03g0759000 | Similar to F16A14.19. | NA |
| NA | BW | 2.42 | Os03g0760000 | Cytochrome P450 81E1, putative, expressed | NA |
| NA | RW | -1.73 | Os03g0761100 | BTH-induced protein phosphatase 2C 2 K2 form | NA |
| NA | BW | -2.12 | Os03g0773150 | 40S ribosomal protein S29. | NA |
| NA | RW | -2.41 | Os03g0790500 | probable carboxylesterase 15 | NA |
| Flavonoid biosynthesis | RW | -2.64 | Os03g0819600 | RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase | ec:5.5.1.6 |
| NA | RW | -2.20 | Os03g0820400 | zinc finger protein ZAT12 | NA |
| NA | RW | -1.73 | Os03g0820500 | actin-depolymerizing factor 3 | NA |
| NA | RW | -2.55 | Os03g0822400 | cyclin-dependent protein kinase inhibitor SMR4 | NA |
| NA | BW | -3.79 | Os03g0823500 | hypothetical protein GQ55_9G027200 | NA |
| NA | BW | 4.65 | Os03g0843000 | Non-protein coding transcript. | NA |
| NA | RW | 2.64 | Os03g0851600 | Hypothetical conserved gene.;Similar to WD-40 repeat family protein. | NA |
| NA | RW | 1.84 | Os03g0854500 | hypothetical protein OsJ_13418 | NA |
| NA | BW | 5.54 | Os04g0103500 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 | NA |
| NA | BW | -3.68 | Os04g0137500 | hypothetical protein E2562_025679 | NA |
| NA | BW | -3.83 | Os04g0160600 | Similar to OSIGBa0096I22.5 protein. | NA |
| Biosynthesis of siderophore group nonribosomal peptides | RW | -2.91 | Os04g0179100 | Os04g0179100, partial | ec:1.3.1.28 |
| Diterpenoid biosynthesis | RW | -3.32 | Os04g0179200 | momilactone A synthase | ec:1.1.1.295 |
| NA | RW | -4.86 | Os04g0301500 | transcription factor bHLH35 | NA |
| NA | RW | 2.03 | Os04g0321600 | FACT complex subunit SPT16 | NA |
| NA | BW | -2.06 | Os04g0322100 | Protein of unknown function DUF26 domain containing protein. | NA |
| NA | BR | 4.25 | Os04g0323800 | Hypothetical protein. | NA |
| NA | BR | 7.72 | Os04g0326300 | hypothetical protein EE612_023157 | NA |
| NA | BR | -9.76 | Os04g0350100 | RecName: Full=Cysteine proteinase inhibitor 10; AltName: Full=Oryzacystatin X; Short=OC-X; AltName: Full=Oryzacystatin-10; Flags: Precursor | NA |
| NA | RW | -2.17 | Os04g0352400 | 70 kDa peptidyl-prolyl isomerase | NA |
| NA | RW | 2.09 | Os04g0370600 | F-box/LRR-repeat protein 14 | NA |
| NA | BW | 7.45 | Os04g0372400 | Conserved hypothetical protein. | NA |
| NA | RW | -2.97 | Os04g0373400 | Os04g0373400 | NA |
| NA | BW | 4.07 | Os04g0376100 | hypothetical protein OsI_15575 | NA |
| NA | BW | 2.60 | Os04g0379600 | Defence response, Rin4 domain containing protein. | NA |
| NA | BW | 4.15 | Os04g0380500 | Similar to OSIGBa0075F02.5 protein. | NA |
| NA | RW | 2.19 | Os04g0388800 | Molecular chaperone, heat shock protein, Hsp40, DnaJ domain containing protein. | NA |
| NA | RW | -1.84 | Os04g0394100 | Similar to H0718E12.3 protein. | NA |
| NA | RW | 2.17 | Os04g0397100 | chaperone protein ClpC1, chloroplastic | NA |
| NA | BR | 2.68 | Os04g0399300 | Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-) (AtNUDT13). | NA |
| NA | RW | -2.37 | Os04g0418500 | Os04g0418500 | NA |
| Glutathione metabolism | BW | -2.84 | Os04g0434800 | OSJNBb0086G13.10 | ec:1.11.1.11 |
| Ascorbate and aldarate metabolism | BW | -2.84 | Os04g0434800 | OSJNBb0086G13.10 | ec:1.11.1.11 |
| NA | RW | -2.26 | Os04g0445100 | 23.2 kDa heat shock protein | NA |
| NA | RW | -4.29 | Os04g0480200 | probable high-affinity nitrate transporter-activating protein 2.2 | NA |
| NA | RW | -2.01 | Os04g0482300 | Kelch related domain containing protein. | NA |
| Butanoate metabolism | RW | -2.35 | Os04g0483500 | very-long-chain 3-oxoacyl-CoA reductase 1 | ec:1.1.1.36 |
| Glyoxylate and dicarboxylate metabolism | RW | -2.35 | Os04g0483500 | very-long-chain 3-oxoacyl-CoA reductase 1 | ec:1.1.1.36 |
| NA | BR | 3.42 | Os04g0490500 | Protein kinase-like domain domain containing protein. | NA |
| NA | BW | 4.65 | Os04g0525100 | OSIGBa0153E02-OSIGBa0093I20.18 | NA |
| NA | RW | -3.16 | Os04g0538000 | hypothetical protein EE612_024639, partial | NA |
| NA | BW | 3.66 | Os04g0556500 | cis-zeatin O-glucosyltransferase 1 | NA |
| NA | BR | 2.55 | Os04g0578400 | Similar to Beta-ring hydroxylase (Fragment). | NA |
| NA | BW | -2.89 | Os04g0582000 | Conserved hypothetical protein. | NA |
| NA | RW | -2.31 | Os04g0586200 | uncharacterized protein LOC4336797 | NA |
| NA | BW | -4.32 | Os04g0606000 | phenolic glucoside malonyltransferase 1 | NA |
| NA | BW | -7.11 | Os04g0611700 | Similar to Ent-kaurene synthase-like 3. | NA |
| NA | BW | -3.13 | Os04g0611800 | ent-kaurene synthase 1 | NA |
| NA | BW | 2.76 | Os04g0616300 | hypothetical protein OsJ_16159 | NA |
| NA | BW | -2.56 | Os04g0624900 | Conserved hypothetical protein. | NA |
| NA | RW | 1.87 | Os04g0628400 | zinc finger BED domain-containing protein RICESLEEPER 1-like | NA |
| NA | BW | 3.97 | Os04g0629300 | helicase-like transcription factor CHR28 | NA |
| NA | BW | -6.32 | Os04g0635350 | Non-protein coding transcript. | NA |
| NA | BW | -3.04 | Os04g0635650 | Non-protein coding transcript. | NA |
| NA | BW | 1.99 | Os04g0653600 | aintegumenta-like protein | NA |
| Flavonoid biosynthesis | RW | -3.77 | Os04g0662600 | flavanone 3-dioxygenase 1-like | ec:1.14.11.9 |
| NA | RW | 1.80 | Os04g0675500 | Similar to Itm1 protein.;Non-protein coding transcript. | NA |
| NA | RW | -2.02 | Os04g0678400 | hypothetical protein OsI_17933 | NA |
| NA | BR | 6.67 | Os04g0690800 | photosystem II 22 kDa protein, chloroplastic | NA |
| NA | BW | 2.90 | Os04g0691800 | hypothetical protein OsJ_16741 | NA |
| NA | BR | 2.72 | Os05g0121600 | putative AP2 domain transcription factor | NA |
| NA | RW | 2.05 | Os05g0126300 | Conserved hypothetical protein. | NA |
| NA | RW | -2.34 | Os05g0127300 | hypothetical protein OsJ_16980 | NA |
| NA | BW | 3.16 | Os05g0129300 | ocs element-binding factor 1 | NA |
| NA | BW | 2.05 | Os05g0151400 | translocase of chloroplast 159, chloroplastic | NA |
| NA | BR | -4.79 | Os05g0157300 | 4Fe-4S ferredoxin, iron-sulpur binding domain domain containing protein.;Similar to 4Fe-4S ferredoxin, iron-sulfur binding protein. | NA |
| NA | RW | 1.87 | Os05g0163200 | Non-protein coding transcript. | NA |
| NA | BW | -2.86 | Os05g0172500 | Cyclin-like F-box domain containing protein. | NA |
| NA | BW | -4.42 | Os05g0202500 | Conserved hypothetical protein. | NA |
| NA | BW | -10.27 | Os05g0208500 | Hypothetical protein.;Hypothetical conserved gene. | NA |
| NA | RW | 2.58 | Os05g0221200 | Similar to 2o545-prov protein.;Protein of unknown function DUF538 domain containing protein. | NA |
| NA | RW | 2.14 | Os05g0239151 | zinc finger BED domain-containing protein RICESLEEPER 1 | NA |
| Amino sugar and nucleotide sugar metabolism | RW | -3.57 | Os05g0247100 | putative chitinase | ec:3.2.1.14 |
| NA | RW | -2.02 | Os05g0296530 | Non-protein coding transcript. | NA |
| NA | RW | 2.30 | Os05g0365500 | pentatricopeptide repeat-containing protein At1g10270 | NA |
| NA | RW | 1.93 | Os05g0392000 | Os05g0392000, partial | NA |
| NA | BW | 2.69 | Os05g0394900 | unknown protein | NA |
| Amino sugar and nucleotide sugar metabolism | RW | -2.23 | Os05g0399300 | ACrystal structure of class I chitinase from Oryza sativa L. japonica | ec:3.2.1.14 |
| Amino sugar and nucleotide sugar metabolism | BR | 2.69 | Os05g0399400 | chitinase 9 | ec:3.2.1.14 |
| NA | RW | -3.34 | Os05g0407100 | Four F5 protein family protein. | NA |
| NA | BR | 4.83 | Os05g0457000 | Cytochrome c oxidase, subunit VIIa domain containing protein. | NA |
| NA | RW | -1.94 | Os05g0476700 | U-box domain-containing protein 16 | NA |
| NA | BW | 5.27 | Os05g0479025 | putative transposase Tam3 | NA |
| NA | RW | 2.33 | Os05g0508700 | TRAF-type domain containing protein.;Similar to Math domain containing protein (Fragment).;Hypothetical conserved gene. | NA |
| NA | BW | 2.16 | Os05g0521500 | Peptidase S16, lon N-terminal domain containing protein. | NA |
| NA | RW | -2.00 | Os05g0529700 | chaperone protein dnaJ C76, chloroplastic isoform X1 | NA |
| NA | RW | -2.47 | Os05g0548700 | Protein of unknown function DUF1618 domain containing protein. | NA |
| NA | RW | -2.61 | Os05g0557100 | aspartic proteinase NANA, chloroplast | NA |
| NA | RW | -2.48 | Os05g0560200 | hypothetical protein OsI_20960 | NA |
| NA | RW | -1.79 | Os05g0562300 | dnaJ homolog subfamily B member 4 | NA |
| Pyruvate metabolism | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Glyoxylate and dicarboxylate metabolism | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Carbon fixation pathways in prokaryotes | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Methane metabolism | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Citrate cycle (TCA cycle) | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Carbon fixation in photosynthetic organisms | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| Cysteine and methionine metabolism | RW | -1.78 | Os05g0574400 | malate dehydrogenase, mitochondrial | ec:1.1.1.37 |
| NA | BR | 3.16 | Os05g0582500 | Os05g0582500, partial | NA |
| NA | BW | 3.69 | Os05g0585800 | serine/threonine-protein kinase PBL27 | NA |
| NA | RW | -3.20 | Os06g0102100 | hypothetical protein CFC21_100343 | NA |
| NA | BR | -4.58 | Os06g0113500 | Conserved hypothetical protein. | NA |
| NA | BW | 2.23 | Os06g0116100 | Hypothetical protein. | NA |
| NA | BW | -3.88 | Os06g0133000 | granule-bound starch synthase I | NA |
| NA | RW | -2.96 | Os06g0133300 | Hypothetical conserved gene. | NA |
| NA | BR | -11.61 | Os06g0147100 | uncharacterized protein LOC4340120 | NA |
| NA | BR | -8.38 | Os06g0159900 | protein kinase-like | NA |
| NA | BR | 3.38 | Os06g0182100 | apoptosis-related protein PNAS-4 like | NA |
| NA | RW | -2.04 | Os06g0192100 | putative UDPglucose:flavonoid-3-oxy glucosyl transferase | NA |
| NA | RW | 1.65 | Os06g0195900 | NOG, C-terminal domain containing protein.;Similar to predicted protein. | NA |
| Drug metabolism - cytochrome P450 | RW | -4.49 | Os06g0203200 | probable flavin-containing monooxygenase 1 isoform X1 | ec:1.14.13.8 |
| NA | BW | 4.59 | Os06g0211500 | Similar to GRAS family transcription factor containing protein. | NA |
| NA | RW | -2.90 | Os06g0218300 | E3 ubiquitin-protein ligase ATL31 | NA |
| NA | RW | 2.57 | Os06g0223800 | C2 calcium-dependent membrane targeting domain containing protein. | NA |
| NA | RW | -2.47 | Os06g0229000 | hypothetical protein EE612_032862, partial | NA |
| NA | BW | 3.44 | Os06g0231050 | RecName: Full=Casparian strip membrane protein 3; Short=OsCASP3 | NA |
| NA | RW | -1.97 | Os06g0236300 | Conserved hypothetical protein. | NA |
| NA | RW | -3.40 | Os06g0247101 | probable galacturonosyltransferase-like 9 | NA |
| Starch and sucrose metabolism | RW | -5.48 | Os06g0247900 | putative endo-beta-1,4-glucanase precursor | ec:3.2.1.4 |
| NA | RW | -3.22 | Os06g0253100 | 16.0 kDa heat shock protein, peroxisomal | NA |
| NA | RW | -3.20 | Os06g0255400 | nudix hydrolase 21, chloroplastic | NA |
| NA | RW | -2.60 | Os06g0269151 | Conserved hypothetical protein. | NA |
| NA | RW | 2.20 | Os06g0343100 | probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 | NA |
| NA | BR | -9.56 | Os06g0347100 | hypothetical protein EE612_033938, partial | NA |
| NA | RW | -2.56 | Os06g0501900 | Cytochrome P450 family protein. | NA |
| NA | BR | 3.90 | Os06g0513943 | Os06g0515301 | NA |
| NA | RW | -2.44 | Os06g0562200 | ABA receptor 11 | NA |
| NA | RW | -2.94 | Os06g0592500 | multiprotein-bridging factor 1c | NA |
| NA | RW | 1.76 | Os06g0605900 | E3 ligase, Resistance to brown planthopper (BPH);Leucine-rich repeat, cysteine-containing subtype containing protein. | NA |
| NA | RW | 2.14 | Os06g0639100 | probable E3 ubiquitin ligase SUD1 | NA |
| NA | RW | -2.66 | Os06g0649000 | putative WRKY transcription factor | NA |
| NA | BW | -2.74 | Os06g0650100 | Similar to Ubiquitin-NEDD8-like protein RUB2. | NA |
| NA | BR | -2.25 | Os06g0675700 | Similar to High pI alpha-glucosidase. | NA |
| NA | RW | -2.52 | Os06g0683700 | Similar to wound induced protein. | NA |
| NA | RW | 1.81 | Os06g0694000 | adagio-like protein 1 | NA |
| NA | BR | -3.32 | Os06g0731200 | Similar to ABC transporter-like protein. | NA |
| NA | BW | 2.29 | Os07g0100500 | Conserved hypothetical protein. | NA |
| NA | BR | 3.13 | Os07g0108800 | Two-pore K+ channel family protein, K+ homeostasis, Osmotic and drought tolerance | NA |
| NA | BW | -7.41 | Os07g0110100 | Conserved hypothetical protein. | NA |
| NA | BW | -4.11 | Os07g0110650 | Hypothetical gene. | NA |
| NA | BW | -3.10 | Os07g0110900 | Conserved hypothetical protein. | NA |
| NA | BW | -2.20 | Os07g0113200 | uncharacterized protein LOC4342242 | NA |
| NA | RW | -6.52 | Os07g0118200 | Protein of unknown function DUF538 domain containing protein. | NA |
| NA | BW | -6.77 | Os07g0119100 | uncharacterized protein LOC4342268 isoform X2 | NA |
| NA | BW | -5.21 | Os07g0119600 | Conserved hypothetical protein. | NA |
| NA | BW | -3.64 | Os07g0120100 | Protein of unknown function DUF538 family protein. | NA |
| NA | BW | -2.39 | Os07g0120650 | Protein of unknown function DUF538 family protein. | NA |
| NA | BW | 6.26 | Os07g0122000 | Protein of unknown function DUF1719, Oryza sativa family protein. | NA |
| NA | RW | 2.06 | Os07g0124500 | hypothetical protein OsJ_22945 | NA |
| NA | RW | -1.86 | Os07g0162900 | hypothetical protein EE612_037298, partial | NA |
| NA | BW | 2.57 | Os07g0176300 | Conserved hypothetical protein. | NA |
| NA | RW | -4.39 | Os07g0178800 | low molecular mass early light-inducible protein HV60, chloroplastic | NA |
| NA | BW | 2.67 | Os07g0194950 | Hypothetical gene. | NA |
| NA | RW | -3.31 | Os07g0213500 | hypothetical protein EE612_037861 | NA |
| NA | RW | -3.37 | Os07g0213600 | Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein. | NA |
| NA | RW | -1.79 | Os07g0227600 | pathogenesis-related genes transcriptional activator Pti6-like protein | NA |
| NA | RW | -2.16 | Os07g0231500 | cyclin-P4-1-like | NA |
| NA | BR | 3.06 | Os07g0294800 | Similar to regulatory protein. | NA |
| NA | BW | -3.94 | Os07g0296000 | Conserved hypothetical protein. | NA |
| NA | RW | 3.61 | Os07g0442800 | Conserved hypothetical protein. | NA |
| NA | BW | -2.37 | Os07g0446600 | hypothetical protein EE612_038921 | NA |
| NA | BW | -3.65 | Os07g0463500 | hypothetical protein OsI_25907 | NA |
| NA | RW | -4.44 | Os07g0469100 | protein CURVATURE THYLAKOID 1B, chloroplastic isoform X2 | NA |
| NA | RW | 3.72 | Os07g0469200 | Similar to predicted protein. | NA |
| NA | RW | -3.79 | Os07g0484900 | Protein of unknown function DUF1210 family protein. | NA |
| NA | RW | -2.09 | Os07g0492300 | Hypothetical protein. | NA |
| NA | BR | 4.99 | Os07g0537701 | Conserved hypothetical protein. | NA |
| Starch and sucrose metabolism | BW | -3.42 | Os07g0538000 | hypothetical protein OsI_26335 | ec:3.2.1.39;ec:3.2.1.21 |
| Cyanoamino acid metabolism | BW | -3.42 | Os07g0538000 | hypothetical protein OsI_26335 | ec:3.2.1.39;ec:3.2.1.21 |
| Phenylpropanoid biosynthesis | BW | -3.42 | Os07g0538000 | hypothetical protein OsI_26335 | ec:3.2.1.39;ec:3.2.1.21 |
| NA | BR | 9.36 | Os07g0543700 | Similar to Mov34/MPN/PAD-1 family protein. | NA |
| NA | BW | 2.74 | Os07g0548500 | Conserved hypothetical protein. | NA |
| NA | BR | 4.42 | Os07g0550500 | Hypothetical conserved gene. | NA |
| NA | RW | -2.55 | Os07g0561300 | Cyclin-like F-box domain containing protein. | NA |
| NA | RW | 2.01 | Os07g0569000 | Conserved hypothetical protein. | NA |
| NA | RW | -2.78 | Os07g0584100 | probable serine/threonine-protein kinase WNK5 | NA |
| Starch and sucrose metabolism | BW | -5.91 | Os07g0616750 | sucrose synthase 3 | ec:2.4.1.13 |
| NA | RW | -1.98 | Os07g0627100 | uncharacterized protein LOC9268879 | NA |
| NA | RW | -3.25 | Os07g0629500 | Similar to cDNA clone:002-114-B06, full insert sequence. | NA |
| NA | BR | 3.76 | Os07g0633300 | Hypothetical conserved gene. | NA |
| NA | RW | 2.05 | Os07g0637200 | uncharacterized protein LOC4344038 | NA |
| NA | RW | -2.03 | Os07g0656100 | Os07g0656100 | NA |
| NA | RW | -2.46 | Os07g0656200 | Similar to Beta-glucosidase 26. | NA |
| NA | BR | -2.46 | Os07g0658000 | Conserved hypothetical protein. | NA |
| NA | RW | 2.38 | Os07g0682400 | putative DAZ associated protein 1 | NA |
| NA | BR | 3.33 | Os07g0686800 | probable serine/threonine-protein kinase PBL2 | NA |
| NA | BW | 2.91 | Os08g0105000 | hypothetical protein OsJ_25746 | NA |
| NA | BR | 5.77 | Os08g0105700 | putative P450 | NA |
| NA | BR | 2.69 | Os08g0112300 | Transferase domain containing protein. | NA |
| NA | RW | 1.76 | Os08g0144400 | PDZ/DHR/GLGF domain containing protein.;Hypothetical conserved gene. | NA |
| NA | BR | 3.07 | Os08g0153900 | uncharacterized protein LOC4344680 | NA |
| NA | RW | 2.36 | Os08g0155700 | hypothetical protein OsJ_26081 | NA |
| NA | RW | 1.84 | Os08g0159900 | DEAD-box ATP-dependent RNA helicase 42 | NA |
| NA | RW | -2.21 | Os08g0162800 | acyl-CoA-binding domain-containing protein 1-like | NA |
| NA | BW | 2.88 | Os08g0163500 | uncharacterized protein LOC4344739 | NA |
| NA | BW | -5.75 | Os08g0171600 | hypothetical protein EE612_042378 | NA |
| NA | RW | -2.31 | Os08g0174100 | Similar to transferase family protein. | NA |
| NA | BW | 2.82 | Os08g0183900 | hypothetical protein OsI_28059 | NA |
| Amino sugar and nucleotide sugar metabolism | BR | 5.78 | Os08g0237200 | probable mannose-1-phosphate guanylyltransferase 3 | ec:2.7.7.13 |
| Fructose and mannose metabolism | BR | 5.78 | Os08g0237200 | probable mannose-1-phosphate guanylyltransferase 3 | ec:2.7.7.13 |
| O-Antigen nucleotide sugar biosynthesis | BR | 5.78 | Os08g0237200 | probable mannose-1-phosphate guanylyltransferase 3 | ec:2.7.7.13 |
| NA | BR | -2.70 | Os08g0246800 | Os05g0475600 | NA |
| NA | RW | -4.17 | Os08g0249000 | Zinc finger, B-box domain containing protein. | NA |
| Glycerolipid metabolism | RW | -3.16 | Os08g0299400 | putative monogalactosyldiacylglycerol synthase | ec:2.4.1.46 |
| NA | RW | -2.04 | Os08g0386200 | probable WRKY transcription factor 54 | NA |
| NA | RW | -2.88 | Os08g0392100 | DIBOA-glucoside dioxygenase BX6 | NA |
| Lysine degradation | BW | 3.69 | Os08g0400200 | uncharacterized protein LOC4345509 | ec:2.1.1.354 |
| NA | RW | -2.24 | Os08g0433600 | Protein of unknown function DUF962 family protein. | NA |
| Ubiquinone and other terpenoid-quinone biosynthesis | BW | -4.15 | Os08g0448000 | putative 4-coumarate-CoA ligase | ec:6.2.1.12 |
| Phenylpropanoid biosynthesis | BW | -4.15 | Os08g0448000 | putative 4-coumarate-CoA ligase | ec:6.2.1.12 |
| NA | RW | -1.71 | Os08g0470200 | Similar to Nectarin III.;Similar to carbonic anhydrase. | NA |
| NA | BR | 5.70 | Os08g0491700 | hypothetical protein | NA |
| NA | BR | 3.61 | Os08g0519000 | Hypothetical conserved gene. | NA |
| NA | RW | -2.28 | Os08g0520600 | Conserved hypothetical protein. | NA |
| NA | RW | -1.96 | Os08g0532800 | Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Similar to Lipid transfer protein. | NA |
| NA | RW | 1.91 | Os08g0535400 | palmitoyltransferase-like protein | NA |
| NA | BR | -2.52 | Os08g0545500 | dehydration-responsive element-binding protein 1I | NA |
| NA | RW | 2.18 | Os09g0127800 | Similar to Coatomer alpha subunit.;Similar to cDNA clone:J023075G08, full insert sequence. | NA |
| NA | RW | 2.11 | Os09g0135400 | Os09g0135400, partial | NA |
| NA | RW | -4.68 | Os09g0272600 | Conserved hypothetical protein. | NA |
| NA | RW | 1.93 | Os09g0281900 | mediator of RNA polymerase II transcription subunit 14 isoform X1 | NA |
| NA | RW | -6.98 | Os09g0336600 | Non-protein coding transcript. | NA |
| Glutathione metabolism | RW | -4.65 | Os09g0367700 | hypothetical protein EE612_047349, partial | ec:2.5.1.18 |
| Drug metabolism - other enzymes | RW | -4.65 | Os09g0367700 | hypothetical protein EE612_047349, partial | ec:2.5.1.18 |
| Drug metabolism - cytochrome P450 | RW | -4.65 | Os09g0367700 | hypothetical protein EE612_047349, partial | ec:2.5.1.18 |
| Metabolism of xenobiotics by cytochrome P450 | RW | -4.65 | Os09g0367700 | hypothetical protein EE612_047349, partial | ec:2.5.1.18 |
| Starch and sucrose metabolism | RW | -2.15 | Os09g0369400 | Os09g0369400 | ec:3.1.3.12 |
| NA | BW | -2.29 | Os09g0369500 | Conserved hypothetical protein.;Hypothetical conserved gene. | NA |
| NA | RW | -2.14 | Os09g0392666 | Conserved hypothetical protein. | NA |
| NA | RW | -1.99 | Os09g0416600 | Conserved hypothetical protein.;Protein of unknown function DUF868, plant family protein. | NA |
| NA | RW | -2.01 | Os09g0425900 | hypothetical protein EE612_047937 | NA |
| NA | RW | -4.39 | Os09g0454600 | Similar to Mitochondrial phosphate transporter (Fragment). | NA |
| NA | RW | -2.16 | Os09g0462301 | 2-hydroxyisoflavanone dehydratase | NA |
| NA | BW | 6.88 | Os09g0463800 | Conserved hypothetical protein. | NA |
| Glutathione metabolism | RW | -1.69 | Os09g0467200 | glutathione transferase GST 23 | ec:2.5.1.18 |
| Drug metabolism - other enzymes | RW | -1.69 | Os09g0467200 | glutathione transferase GST 23 | ec:2.5.1.18 |
| Drug metabolism - cytochrome P450 | RW | -1.69 | Os09g0467200 | glutathione transferase GST 23 | ec:2.5.1.18 |
| Metabolism of xenobiotics by cytochrome P450 | RW | -1.69 | Os09g0467200 | glutathione transferase GST 23 | ec:2.5.1.18 |
| NA | RW | -4.11 | Os09g0472700 | hypothetical protein EE612_048464 | NA |
| NA | RW | 2.43 | Os09g0482400 | heat shock protein 90 | NA |
| NA | RW | -2.07 | Os09g0494500 | Conserved hypothetical protein. | NA |
| Drug metabolism - other enzymes | RW | 2.13 | Os09g0503400 | leucine--tRNA ligase, cytoplasmic | ec:3.1.1.1;ec:6.1.1.4 |
| Aminoacyl-tRNA biosynthesis | RW | 2.13 | Os09g0503400 | leucine--tRNA ligase, cytoplasmic | ec:3.1.1.1;ec:6.1.1.4 |
| NA | RW | 2.08 | Os09g0505100 | ubiquitin carboxyl-terminal hydrolase 2 | NA |
| NA | BR | 4.39 | Os09g0511700 | beta-glucosidase 32 | NA |
| NA | RW | -3.56 | Os09g0518000 | putative UDP-glucose:salicylic acid glucosyltransferase | NA |
| NA | RW | -2.19 | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | NA |
| NA | RW | 2.30 | Os09g0530600 | hypothetical protein EE612_049104, partial | NA |
| NA | RW | -2.47 | Os09g0535500 | probable E3 ubiquitin-protein ligase ATL44 | NA |
| NA | BW | 3.11 | Os09g0539700 | uncharacterized protein LOC4347722 | NA |
| Drug metabolism - cytochrome P450 | BR | 3.69 | Os09g0549300 | probable flavin-containing monooxygenase 1 | ec:1.14.13.8 |
| NA | BW | -2.89 | Os09g0570300 | short-chain dehydrogenase TIC 32, chloroplastic | NA |
| NA | BW | -2.06 | Os09g0570850 | late histone H2B.L4 | NA |
| NA | BR | 8.50 | Os10g0124500 | Cyclin-like F-box domain containing protein. | NA |
| NA | BW | 4.37 | Os10g0130500 | Hypothetical protein. | NA |
| NA | BW | 3.88 | Os10g0131800 | disease resistance protein Pik-2-like isoform X2 | NA |
| NA | RW | -1.95 | Os10g0160600 | hypothetical protein OsI_03557 | NA |
| NA | BW | -3.46 | Os10g0163130 | hypothetical protein OsI_16010 | NA |
| NA | RW | -6.04 | Os10g0165400 | Hypothetical gene. | NA |
| NA | BR | 3.83 | Os10g0198333 | Conserved hypothetical protein. | NA |
| NA | BW | 5.31 | Os10g0212100 | Conserved hypothetical protein. | NA |
| NA | BW | 7.51 | Os10g0213100 | Putative aminotransferase | NA |
| NA | BW | -4.05 | Os10g0325400 | Remorin, C-terminal domain containing protein. | NA |
| NA | BW | 9.36 | Os10g0328100 | putative antifreeze glycoprotein precursor | NA |
| NA | BW | -4.58 | Os10g0329400 | Conserved hypothetical protein. | NA |
| NA | BW | -2.71 | Os10g0340301 | Conserved hypothetical protein. | NA |
| NA | BW | -10.66 | Os10g0340800 | Conserved hypothetical protein. | NA |
| NA | BR | 4.84 | Os10g0359200 | putative UPF0496 protein 5 | NA |
| NA | BW | 3.56 | Os10g0364600 | hypothetical protein OsJ_31243 | NA |
| NA | RW | -2.95 | Os10g0392400 | protein TIFY 11d | NA |
| NA | RW | -2.73 | Os10g0419300 | HSF-type DNA-binding domain containing protein, expressed | NA |
| NA | BW | -2.62 | Os10g0482900 | Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed | NA |
| NA | BW | -3.77 | Os10g0490800 | Similar to Secretory protein. | NA |
| NA | BR | 4.29 | Os10g0491000 | Plant Basic Secretory Protein family protein. | NA |
| NA | RW | 2.59 | Os10g0498600 | protein STABILIZED1 | NA |
| NA | RW | -3.57 | Os10g0504900 | non-specific lipid-transfer protein 2P | NA |
| NA | BR | 4.77 | Os10g0528300 | Tau class GST protein 4. | NA |
| NA | RW | -2.93 | Os10g0535800 | Protein of unknown function Cys-rich domain containing protein. | NA |
| NA | RW | 1.97 | Os10g0573900 | 60S ribosomal export protein NMD3 | NA |
| NA | RW | -1.94 | Os10g0576900 | hypothetical protein OsJ_32578 | NA |
| NA | RW | 2.46 | Os11g0104300 | protein DWARF 53 | NA |
| NA | BR | 3.46 | Os11g0115100 | RecName: Full=Non-specific lipid-transfer protein 3; Short=LTP 3; Flags: Precursor | NA |
| NA | RW | -2.15 | Os11g0149200 | Conserved hypothetical protein. | NA |
| NA | RW | -4.41 | Os11g0151400 | Cytochrome P450 | NA |
| NA | RW | -3.27 | Os11g0153300 | Conserved hypothetical protein. | NA |
| NA | BW | -2.27 | Os11g0153800 | Similar to Ribosomal protein S25 (40S ribosomal 25S subunit). | NA |
| NA | BW | -3.90 | Os11g0161200 | Similar to ATOZI1. | NA |
| NA | RW | 2.43 | Os11g0171400 | Integrator complex, subunit 3 domain containing protein. | NA |
| NA | BR | -6.45 | Os11g0172350 | Os11g0172350 | NA |
| NA | RW | 2.09 | Os11g0174000 | Adaptin N terminal region, putative | NA |
| NA | RW | 2.21 | Os11g0175900 | hypothetical protein OsI_35314 | NA |
| NA | RW | -3.43 | Os11g0181800 | hypothetical protein OsI_35356 | NA |
| NA | RW | -2.01 | Os11g0184900 | hypothetical protein OsJ_33216 | NA |
| NA | RW | -5.25 | Os11g0237300 | Hypothetical conserved gene. | NA |
| NA | BW | 3.79 | Os11g0245800 | hypothetical protein EE612_054452, partial | NA |
| NA | BW | -6.57 | Os11g0306300 | hypothetical protein OsJ_33728 | NA |
| NA | BW | -3.35 | Os11g0308266 | Non-protein coding transcript. | NA |
| NA | RW | 6.15 | Os11g0513700 | Protein kinase-like domain containing protein. | NA |
| NA | RW | 8.71 | Os11g0513900 | expressed protein | NA |
| NA | BW | 2.64 | Os11g0528200 | hypothetical protein EE612_055875, partial | NA |
| NA | RW | -2.47 | Os11g0536400 | Non-protein coding transcript. | NA |
| NA | BR | 8.30 | Os11g0539600 | Conserved hypothetical protein. | NA |
| NA | BR | -7.18 | Os11g0540100 | hypothetical protein OsI_36388 | NA |
| NA | BW | -2.65 | Os11g0582400 | embryo-specific protein | NA |
| NA | RW | 2.18 | Os11g0585900 | Os11g0585900, partial | NA |
| NA | RW | -4.35 | Os11g0592200 | Pathogenesis-related (PR) protein, Drought tolerance, Abiotic stress response, Disease resistance | NA |
| NA | RW | -3.54 | Os11g0594000 | hexose carrier protein HEX6 | NA |
| NA | BR | 2.97 | Os11g0595100 | Protein of unknown function DUF295 family protein. | NA |
| NA | RW | -3.05 | Os11g0599200 | UDP-glycosyltransferase 72B3 | NA |
| NA | BR | -7.52 | Os11g0633500 | NB-ARC domain containing protein, expressed | NA |
| NA | RW | 3.70 | Os11g0640800 | disease resistance RPP13-like protein 4 | NA |
| NA | BR | 3.92 | Os11g0642900 | Hypothetical protein. | NA |
| NA | RW | 1.80 | Os12g0104800 | Similar to Clathrin heavy chain.;Non-protein coding transcript. | NA |
| NA | BW | -3.03 | Os12g0110300 | Similar to cDNA, clone: J065191E12, full insert sequence. | NA |
| NA | RW | -4.21 | Os12g0150200 | Os12g0150200, partial | NA |
| NA | BW | 5.44 | Os12g0156500 | probable F-box protein At2g36090 | NA |
| NA | RW | -3.34 | Os12g0157700 | Hypothetical conserved gene. | NA |
| NA | BW | -2.81 | Os12g0158600 | Os12g0158600 | NA |
| NA | RW | -2.24 | Os12g0162800 | Domain of unknown function DUF1618 domain containing protein. | NA |
| NA | RW | 1.98 | Os12g0166000 | Os12g0166000, partial | NA |
| NA | BW | 2.43 | Os12g0193800 | Conserved hypothetical protein. | NA |
| NA | RW | 2.39 | Os12g0209700 | Hypothetical conserved gene. | NA |
| NA | RW | -1.82 | Os12g0230600 | Protein of unknown function DUF1685 family protein. | NA |
| NA | RW | -3.23 | Os12g0437800 | hypothetical protein OsI_38185 | NA |
| NA | RW | 1.80 | Os12g0446500 | FACT complex subunit SPT16-like | NA |
| NA | BW | -8.14 | Os12g0465800 | Conserved hypothetical protein. | NA |
| NA | BR | -7.05 | Os12g0551900 | Os12g0551900 | NA |
| NA | BW | -4.61 | Os12g0564400 | OSJNBa0079F16.4 | NA |
| NA | BW | 3.28 | Os12g0566000 | Similar to Boron transporter.;Boron (B) transporter, Boron uptake and xylem loading | NA |
| NA | RW | 2.39 | Os12g0568800 | importin subunit beta-1 | NA |
| NA | BR | 7.78 | Os12g0584200 | Similar to cDNA clone:J013075O22, full insert sequence.;Conserved hypothetical protein. | NA |
| NA | BR | 3.08 | Os12g0586300 | hypothetical protein OsJ_36683 | NA |
| NA | RW | 2.03 | Os12g0586600 | hypothetical protein EE612_060598, partial | NA |
| NA | RW | 2.09 | Os12g0597300 | transposon protein, putative, Mutator sub-class, expressed | NA |
| NA | RW | 2.25 | Os12g0611200 | Os12g0611200, partial | NA |
| NA | BW | -6.03 | Os12g0622900 | Mov34/MPN/PAD-1 family protein, expressed | NA |
| NA | RW | -2.39 | Os12g0630200 | protein P21 | NA |
| NA | RW | 2.71 | Os12g0638400 | Conserved hypothetical protein. | NA |
| Pathway | FDR | Gene ID | Gene description |
Search for co-expressed genes
| Node Gene ID | Node gene category | Edge Gene ID | Edge gene descriptions | PCC | P-value | Degree | TF Family | Pathway | Gene symbol |
|---|---|---|---|---|---|---|---|---|---|
| Os11g0444000 | UGT | Os01g0118400 | Similar to HGA6. | 0.77 | 0.07 | 16 | NA | Flavonoid | NA |
| Os11g0599200 | UGT | Os01g0118400 | Similar to HGA6. | 0.75 | 0.09 | 16 | NA | Flavonoid | NA |
| Os02g0767300 | FLS | Os01g0118400 | Similar to HGA6. | 0.75 | 0.09 | 16 | NA | Flavonoid | NA |
| Os02g0177600 | 4CL | Os01g0118400 | Similar to HGA6. | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os05g0427400 | PAL | Os01g0118400 | Similar to HGA6. | 0.76 | 0.08 | 16 | NA | Flavonoid | NA |
| Os02g0467600 | C4H | Os01g0118400 | Similar to HGA6. | 0.89 | 0.02 | 16 | NA | Flavonoid | NA |
| Os10g0320100 | F3'H | Os01g0118400 | Similar to HGA6. | 0.77 | 0.07 | 16 | NA | Flavonoid | NA |
| Os06g0102100 | C4H | Os01g0118400 | Similar to HGA6. | 0.83 | 0.04 | 16 | NA | Flavonoid | NA |
| Os08g0448000 | 4CL | Os01g0118400 | Similar to HGA6. | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os02g0627100 | PAL | Os01g0118400 | Similar to HGA6. | 0.78 | 0.07 | 16 | NA | Flavonoid | NA |
| Os06g0192100 | UGT | Os01g0118400 | Similar to HGA6. | 0.74 | 0.09 | 16 | NA | Flavonoid | NA |
| Os03g0819600 | CHI | Os01g0118400 | Similar to HGA6. | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os06g0288300 | UGT | Os01g0118400 | Similar to HGA6. | 0.72 | 0.11 | 16 | NA | Flavonoid | NA |
| Os06g0205100 | R2R3_MYB | Os01g0118400 | Similar to HGA6. | 0.82 | 0.05 | 16 | NA | Flavonoid | NA |
| Os10g0317900 | F3H | Os01g0118400 | Similar to HGA6. | 0.91 | 0.01 | 16 | NA | Flavonoid | NA |
| Os04g0662600 | F3H | Os01g0118400 | Similar to HGA6. | 0.79 | 0.06 | 16 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.76 | 0.08 | 16 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.99 | 0.00 | 16 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.74 | 0.09 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.96 | 0.00 | 16 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.82 | 0.04 | 16 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.85 | 0.03 | 16 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.77 | 0.08 | 16 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.83 | 0.04 | 16 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.77 | 0.07 | 16 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.82 | 0.04 | 16 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.93 | 0.01 | 16 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.93 | 0.01 | 16 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.74 | 0.09 | 16 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os01g0303100 | Similar to Chitinase precursor (EC 3.2.1.17). | 0.77 | 0.07 | 16 | NA | Flavonoid | NA |
| Os08g0515900 | DFR | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.89 | 0.02 | 12 | NA | Flavonoid | PR1-12 |
| Os01g0372500 | LDOX | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.81 | 0.05 | 12 | NA | Flavonoid | PR1-12 |
| Os04g0206500 | UGT | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.72 | 0.11 | 12 | NA | Flavonoid | PR1-12 |
| Os02g0682500 | WD40 | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.79 | 0.06 | 12 | NA | Flavonoid | PR1-12 |
| Os07g0148200 | LDOX | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.76 | 0.08 | 12 | NA | Flavonoid | PR1-12 |
| Os04g0518100 | PAL | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.75 | 0.09 | 12 | NA | Flavonoid | PR1-12 |
| Os06g0203600 | CHI | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.92 | 0.01 | 12 | NA | Flavonoid | PR1-12 |
| Os06g0656500 | 4CL | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.93 | 0.01 | 12 | NA | Flavonoid | PR1-12 |
| Os11g0530600 | CHS | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.70 | 0.12 | 12 | NA | Flavonoid | PR1-12 |
| Os03g0184550 | DFR | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.90 | 0.01 | 12 | NA | Flavonoid | PR1-12 |
| Os10g0559500 | F3H | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.74 | 0.09 | 12 | NA | Flavonoid | PR1-12 |
| Os01g0638000 | UGT | Os01g0382400 | Similar to Pathogenesis-related protein PRB1-2 precursor. | 0.73 | 0.10 | 12 | NA | Flavonoid | PR1-12 |
| Os05g0320700 | C4H | Os01g0628700 | Cytochrome P450. | 0.80 | 0.06 | 16 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os01g0628700 | Cytochrome P450. | 0.98 | 0.00 | 16 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os01g0628700 | Cytochrome P450. | 0.74 | 0.09 | 16 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os01g0628700 | Cytochrome P450. | 0.90 | 0.01 | 16 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os01g0628700 | Cytochrome P450. | 0.85 | 0.03 | 16 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os01g0628700 | Cytochrome P450. | 0.95 | 0.00 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os01g0628700 | Cytochrome P450. | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0628700 | Cytochrome P450. | 0.82 | 0.04 | 16 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os01g0628700 | Cytochrome P450. | 0.78 | 0.07 | 16 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os01g0628700 | Cytochrome P450. | 0.74 | 0.09 | 16 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os01g0628700 | Cytochrome P450. | 0.90 | 0.01 | 16 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os01g0628700 | Cytochrome P450. | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os01g0628700 | Cytochrome P450. | 0.72 | 0.11 | 16 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os01g0628700 | Cytochrome P450. | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os01g0628700 | Cytochrome P450. | 0.87 | 0.03 | 16 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os01g0628700 | Cytochrome P450. | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.93 | 0.01 | 17 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.82 | 0.05 | 17 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.94 | 0.01 | 17 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.89 | 0.02 | 17 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.75 | 0.09 | 17 | NA | Flavonoid | NA |
| Os11g0116300 | CHI | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.72 | 0.11 | 17 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.80 | 0.05 | 17 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.85 | 0.03 | 17 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.74 | 0.09 | 17 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.89 | 0.02 | 17 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.77 | 0.07 | 17 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.81 | 0.05 | 17 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.83 | 0.04 | 17 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.99 | 0.00 | 17 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.74 | 0.09 | 17 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.73 | 0.10 | 17 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os01g0680900 | Cytochrome b561/ferric reductase transmembrane domain containing protein.;Similar to Dopamine beta-monooxygenase. | 0.88 | 0.02 | 17 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.90 | 0.01 | 16 | NA | Flavonoid | GSTU40 |
| Os05g0215300 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.95 | 0.00 | 16 | NA | Flavonoid | GSTU40 |
| Os04g0518100 | PAL | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.92 | 0.01 | 16 | NA | Flavonoid | GSTU40 |
| Os05g0320700 | C4H | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.80 | 0.06 | 16 | NA | Flavonoid | GSTU40 |
| Os03g0122300 | F3H | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.86 | 0.03 | 16 | NA | Flavonoid | GSTU40 |
| Os02g0589400 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.91 | 0.01 | 16 | NA | Flavonoid | GSTU40 |
| Os02g0682500 | WD40 | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.72 | 0.11 | 16 | NA | Flavonoid | GSTU40 |
| Os01g0638000 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.85 | 0.03 | 16 | NA | Flavonoid | GSTU40 |
| Os04g0557500 | bHLH_Kala4 | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.79 | 0.06 | 16 | NA | Flavonoid | GSTU40 |
| Os04g0206500 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.84 | 0.04 | 16 | NA | Flavonoid | GSTU40 |
| Os11g0116300 | CHI | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.71 | 0.12 | 16 | NA | Flavonoid | GSTU40 |
| Os01g0372500 | LDOX | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.75 | 0.08 | 16 | NA | Flavonoid | GSTU40 |
| Os01g0901600 | 4CL | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.80 | 0.06 | 16 | NA | Flavonoid | GSTU40 |
| Os01g0736100 | UGT | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 1.00 | 0.00 | 16 | NA | Flavonoid | GSTU40 |
| Os01g0633500 | DFR | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.84 | 0.04 | 16 | NA | Flavonoid | GSTU40 |
| Os10g0536400 | F3H | Os01g0692000 | Similar to Glutathione S-transferase GSTU6. | 0.77 | 0.07 | 16 | NA | Flavonoid | GSTU40 |
| Os05g0320700 | C4H | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.72 | 0.11 | 16 | NA | Flavonoid | TIP1;2 |
| Os05g0215300 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.92 | 0.01 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0734600 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.93 | 0.01 | 16 | NA | Flavonoid | TIP1;2 |
| Os04g0518100 | PAL | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.92 | 0.01 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0633500 | DFR | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.84 | 0.04 | 16 | NA | Flavonoid | TIP1;2 |
| Os03g0184550 | DFR | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.75 | 0.09 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0901600 | 4CL | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.78 | 0.07 | 16 | NA | Flavonoid | TIP1;2 |
| Os10g0536400 | F3H | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.81 | 0.05 | 16 | NA | Flavonoid | TIP1;2 |
| Os04g0557500 | bHLH_Kala4 | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.79 | 0.06 | 16 | NA | Flavonoid | TIP1;2 |
| Os04g0206500 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.84 | 0.04 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0736100 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.99 | 0.00 | 16 | NA | Flavonoid | TIP1;2 |
| Os03g0122300 | F3H | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.85 | 0.03 | 16 | NA | Flavonoid | TIP1;2 |
| Os02g0589400 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.93 | 0.01 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0638000 | UGT | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.82 | 0.04 | 16 | NA | Flavonoid | TIP1;2 |
| Os02g0682500 | WD40 | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.75 | 0.09 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0372500 | LDOX | Os01g0975900 | Similar to Tonoplast membrane integral protein ZmTIP1-2. | 0.73 | 0.10 | 16 | NA | Flavonoid | TIP1;2 |
| Os01g0372500 | LDOX | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.73 | 0.10 | 17 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.80 | 0.05 | 17 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.84 | 0.03 | 17 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.93 | 0.01 | 17 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.75 | 0.09 | 17 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.81 | 0.05 | 17 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.89 | 0.02 | 17 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.98 | 0.00 | 17 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.74 | 0.09 | 17 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.75 | 0.09 | 17 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.77 | 0.07 | 17 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.89 | 0.02 | 17 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.80 | 0.05 | 17 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.73 | 0.10 | 17 | NA | Flavonoid | NA |
| Os11g0116300 | CHI | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.72 | 0.11 | 17 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.92 | 0.01 | 17 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os03g0154000 | Aromatic-ring hydroxylase family protein. | 0.89 | 0.02 | 17 | NA | Flavonoid | NA |
| Os02g0626100 | PAL | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.70 | 0.12 | 12 | NA | Flavonoid | NA |
| Os04g0630800 | ANR | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.73 | 0.10 | 12 | NA | Flavonoid | NA |
| Os10g0317900 | F3H | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.80 | 0.05 | 12 | NA | Flavonoid | NA |
| Os11g0599200 | UGT | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.94 | 0.00 | 12 | NA | Flavonoid | NA |
| Os09g0491820 | DFR | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.79 | 0.06 | 12 | NA | Flavonoid | NA |
| Os02g0177600 | 4CL | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.90 | 0.01 | 12 | NA | Flavonoid | NA |
| Os06g0192100 | UGT | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.70 | 0.12 | 12 | NA | Flavonoid | NA |
| Os02g0767300 | FLS | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.78 | 0.06 | 12 | NA | Flavonoid | NA |
| Os06g0102100 | C4H | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.89 | 0.02 | 12 | NA | Flavonoid | NA |
| Os01g0597800 | UGT | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.72 | 0.11 | 12 | NA | Flavonoid | NA |
| Os06g0288300 | UGT | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.80 | 0.05 | 12 | NA | Flavonoid | NA |
| Os03g0819600 | CHI | Os03g0245700 | Similar to senescence-associated protein 15.;Thiolase-like, subgroup domain containing protein. | 0.92 | 0.01 | 12 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os04g0691400 | Similar to POT family protein. | 0.99 | 0.00 | 16 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os04g0691400 | Similar to POT family protein. | 0.75 | 0.08 | 16 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os04g0691400 | Similar to POT family protein. | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os04g0691400 | Similar to POT family protein. | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os04g0691400 | Similar to POT family protein. | 0.86 | 0.03 | 16 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os04g0691400 | Similar to POT family protein. | 0.83 | 0.04 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os04g0691400 | Similar to POT family protein. | 0.94 | 0.01 | 16 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os04g0691400 | Similar to POT family protein. | 0.79 | 0.06 | 16 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os04g0691400 | Similar to POT family protein. | 0.72 | 0.11 | 16 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os04g0691400 | Similar to POT family protein. | 0.78 | 0.06 | 16 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os04g0691400 | Similar to POT family protein. | 0.75 | 0.09 | 16 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os04g0691400 | Similar to POT family protein. | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os04g0691400 | Similar to POT family protein. | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os04g0691400 | Similar to POT family protein. | 0.91 | 0.01 | 16 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os04g0691400 | Similar to POT family protein. | 0.79 | 0.06 | 16 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os04g0691400 | Similar to POT family protein. | 0.94 | 0.01 | 16 | NA | Flavonoid | NA |
| Os11g0444000 | UGT | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.76 | 0.08 | 12 | NA | Flavonoid | NA |
| Os02g0467600 | C4H | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.71 | 0.12 | 12 | NA | Flavonoid | NA |
| Os02g0697400 | 4CL | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.87 | 0.03 | 12 | NA | Flavonoid | NA |
| Os08g0448000 | 4CL | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.98 | 0.00 | 12 | NA | Flavonoid | NA |
| Os02g0767300 | FLS | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.78 | 0.07 | 12 | NA | Flavonoid | NA |
| Os03g0259400 | LAR | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.74 | 0.09 | 12 | NA | Flavonoid | NA |
| Os05g0427400 | PAL | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.74 | 0.09 | 12 | NA | Flavonoid | NA |
| Os03g0289800 | LAR | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.70 | 0.12 | 12 | NA | Flavonoid | NA |
| Os06g0205100 | R2R3_MYB | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.72 | 0.11 | 12 | NA | Flavonoid | NA |
| Os02g0778500 | CHI | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.91 | 0.01 | 12 | NA | Flavonoid | NA |
| Os02g0177600 | 4CL | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.78 | 0.07 | 12 | NA | Flavonoid | NA |
| Os02g0483500 | UGT | Os07g0296900 | Regulation of nutrient metabolism and endosperm development | 0.71 | 0.11 | 12 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.99 | 0.00 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os01g0372500 | LDOX | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.81 | 0.05 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os04g0518100 | PAL | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.95 | 0.00 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os05g0215300 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.92 | 0.01 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os05g0320700 | C4H | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.79 | 0.06 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os03g0122300 | F3H | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.89 | 0.02 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os01g0638000 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.89 | 0.02 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os03g0184550 | DFR | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.75 | 0.09 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os04g0206500 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.86 | 0.03 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os01g0901600 | 4CL | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.75 | 0.09 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os01g0734600 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.88 | 0.02 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os01g0633500 | DFR | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.78 | 0.07 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os02g0589400 | UGT | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.89 | 0.02 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os10g0536400 | F3H | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.73 | 0.10 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os02g0682500 | WD40 | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.76 | 0.08 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os04g0557500 | bHLH_Kala4 | Os08g0189300 | Germin-like protein 8-4, Disease resistance | 0.72 | 0.11 | 16 | NA | Flavonoid | OsGLP8-4 |
| Os02g0697400 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.91 | 0.01 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0697400 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.91 | 0.01 | 12 | NA | Flavonoid | GLP8-10 |
| Os08g0448000 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.96 | 0.00 | 12 | NA | Flavonoid | GLP8-10 |
| Os08g0448000 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.96 | 0.00 | 12 | NA | Flavonoid | GLP8-10 |
| Os06g0205100 | R2R3_MYB | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.72 | 0.11 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os06g0205100 | R2R3_MYB | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.72 | 0.11 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0697400 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.91 | 0.01 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0697400 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.91 | 0.01 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0483500 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0483500 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | GLP8-10 |
| Os03g0289800 | LAR | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.80 | 0.06 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os03g0289800 | LAR | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.80 | 0.06 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os06g0205100 | R2R3_MYB | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.72 | 0.11 | 12 | NA | Flavonoid | GLP8-10 |
| Os06g0205100 | R2R3_MYB | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.72 | 0.11 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0483500 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0483500 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os05g0427400 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.90 | 0.01 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os05g0427400 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.90 | 0.01 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os05g0427400 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.90 | 0.01 | 12 | NA | Flavonoid | GLP8-10 |
| Os05g0427400 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.90 | 0.01 | 12 | NA | Flavonoid | GLP8-10 |
| Os03g0289800 | LAR | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.80 | 0.06 | 12 | NA | Flavonoid | GLP8-10 |
| Os03g0289800 | LAR | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.80 | 0.06 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0320300 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.71 | 0.11 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0320300 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.71 | 0.11 | 12 | NA | Flavonoid | GLP8-10 |
| Os08g0448000 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.96 | 0.00 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os08g0448000 | 4CL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.96 | 0.00 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0767300 | FLS | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.76 | 0.08 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0767300 | FLS | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.76 | 0.08 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os07g0241800 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os07g0241800 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os07g0241800 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | GLP8-10 |
| Os07g0241800 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0778500 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0778500 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0627100 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0627100 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0767300 | FLS | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.76 | 0.08 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0767300 | FLS | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.76 | 0.08 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0778500 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0778500 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.82 | 0.05 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0320300 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.71 | 0.11 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0320300 | CHI | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.71 | 0.11 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os11g0444000 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.84 | 0.03 | 12 | NA | Flavonoid | GLP8-10 |
| Os11g0444000 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.84 | 0.03 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0627100 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | GLP8-10 |
| Os02g0627100 | PAL | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.73 | 0.10 | 12 | NA | Flavonoid | GLP8-10 |
| Os11g0444000 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.84 | 0.03 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os11g0444000 | UGT | Os08g0189900 | Germin-like protein 8-10, Disease resistance | 0.84 | 0.03 | 12 | NA | Flavonoid | OsGLP8-10 |
| Os02g0627100 | PAL | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.73 | 0.10 | 16 | NA | Flavonoid | OsUGE3 |
| Os11g0599200 | UGT | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.84 | 0.04 | 16 | NA | Flavonoid | OsUGE3 |
| Os03g0819600 | CHI | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.94 | 0.01 | 16 | NA | Flavonoid | OsUGE3 |
| Os04g0662600 | F3H | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.77 | 0.07 | 16 | NA | Flavonoid | OsUGE3 |
| Os06g0192100 | UGT | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.76 | 0.08 | 16 | NA | Flavonoid | OsUGE3 |
| Os02g0177600 | 4CL | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.95 | 0.00 | 16 | NA | Flavonoid | OsUGE3 |
| Os02g0467600 | C4H | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.81 | 0.05 | 16 | NA | Flavonoid | OsUGE3 |
| Os11g0444000 | UGT | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.71 | 0.11 | 16 | NA | Flavonoid | OsUGE3 |
| Os05g0427400 | PAL | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.71 | 0.11 | 16 | NA | Flavonoid | OsUGE3 |
| Os10g0317900 | F3H | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.95 | 0.00 | 16 | NA | Flavonoid | OsUGE3 |
| Os06g0205100 | R2R3_MYB | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.73 | 0.10 | 16 | NA | Flavonoid | OsUGE3 |
| Os06g0288300 | UGT | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.73 | 0.10 | 16 | NA | Flavonoid | OsUGE3 |
| Os02g0767300 | FLS | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.84 | 0.03 | 16 | NA | Flavonoid | OsUGE3 |
| Os06g0102100 | C4H | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.87 | 0.02 | 16 | NA | Flavonoid | OsUGE3 |
| Os10g0320100 | F3'H | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.74 | 0.09 | 16 | NA | Flavonoid | OsUGE3 |
| Os08g0448000 | 4CL | Os09g0526700 | Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase). | 0.76 | 0.08 | 16 | NA | Flavonoid | OsUGE3 |
| Os04g0518100 | PAL | Os10g0478500 | MATH domain containing protein. | 0.94 | 0.01 | 16 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os10g0478500 | MATH domain containing protein. | 0.76 | 0.08 | 16 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os10g0478500 | MATH domain containing protein. | 0.75 | 0.09 | 16 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os10g0478500 | MATH domain containing protein. | 0.72 | 0.10 | 16 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os10g0478500 | MATH domain containing protein. | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os10g0478500 | MATH domain containing protein. | 0.99 | 0.00 | 16 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os10g0478500 | MATH domain containing protein. | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os10g0478500 | MATH domain containing protein. | 0.83 | 0.04 | 16 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os10g0478500 | MATH domain containing protein. | 0.71 | 0.11 | 16 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os10g0478500 | MATH domain containing protein. | 0.86 | 0.03 | 16 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os10g0478500 | MATH domain containing protein. | 0.78 | 0.07 | 16 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os10g0478500 | MATH domain containing protein. | 0.79 | 0.06 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os10g0478500 | MATH domain containing protein. | 0.94 | 0.01 | 16 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os10g0478500 | MATH domain containing protein. | 0.79 | 0.06 | 16 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os10g0478500 | MATH domain containing protein. | 0.91 | 0.01 | 16 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os10g0478500 | MATH domain containing protein. | 0.72 | 0.11 | 16 | NA | Flavonoid | NA |
| Os04g0206500 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.81 | 0.05 | 16 | NA | Flavonoid | NA |
| Os04g0518100 | PAL | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os02g0682500 | WD40 | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.77 | 0.07 | 16 | NA | Flavonoid | NA |
| Os04g0557500 | bHLH_Kala4 | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.75 | 0.09 | 16 | NA | Flavonoid | NA |
| Os01g0638000 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.84 | 0.04 | 16 | NA | Flavonoid | NA |
| Os01g0734600 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.92 | 0.01 | 16 | NA | Flavonoid | NA |
| Os01g0901600 | 4CL | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.72 | 0.11 | 16 | NA | Flavonoid | NA |
| Os05g0215300 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.95 | 0.00 | 16 | NA | Flavonoid | NA |
| Os02g0589400 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.93 | 0.01 | 16 | NA | Flavonoid | NA |
| Os01g0372500 | LDOX | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.76 | 0.08 | 16 | NA | Flavonoid | NA |
| Os10g0536400 | F3H | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os03g0122300 | F3H | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.88 | 0.02 | 16 | NA | Flavonoid | NA |
| Os01g0633500 | DFR | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.80 | 0.05 | 16 | NA | Flavonoid | NA |
| Os03g0184550 | DFR | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.73 | 0.10 | 16 | NA | Flavonoid | NA |
| Os01g0736100 | UGT | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.99 | 0.00 | 16 | NA | Flavonoid | NA |
| Os05g0320700 | C4H | Os12g0472500 | Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation | 0.76 | 0.08 | 16 | NA | Flavonoid | NA |
| Os06g0699700 | ADCS | Os02g0550800 | Ammonium transporter family protein. | 0.76 | 0.08 | 9 | NA | Folate | AMT3;3 |
| Os03g0111100 | FPGS | Os02g0550800 | Ammonium transporter family protein. | 0.70 | 0.12 | 9 | NA | Folate | AMT3;3 |
| Os10g0503200 | FPGS | Os02g0550800 | Ammonium transporter family protein. | 0.96 | 0.00 | 9 | NA | Folate | AMT3;3 |
| Os09g0553300 | DHNP3 | Os02g0550800 | Ammonium transporter family protein. | 0.87 | 0.03 | 9 | NA | Folate | AMT3;3 |
| Os11g0484400 | DHFR | Os02g0550800 | Ammonium transporter family protein. | 0.79 | 0.06 | 9 | NA | Folate | AMT3;3 |
| Os04g0662700 | GTPCHI | Os02g0550800 | Ammonium transporter family protein. | 0.85 | 0.03 | 9 | NA | Folate | AMT3;3 |
| Os02g0273100 | ADCL | Os02g0550800 | Ammonium transporter family protein. | 0.71 | 0.12 | 9 | NA | Folate | AMT3;3 |
| Os12g0623800 | DHFS | Os02g0550800 | Ammonium transporter family protein. | 0.86 | 0.03 | 9 | NA | Folate | AMT3;3 |
| Os07g0618500 | DHPS/HPPK | Os02g0550800 | Ammonium transporter family protein. | 0.74 | 0.09 | 9 | NA | Folate | AMT3;3 |
| Os12g0623800 | DHFS | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.79 | 0.06 | 9 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.72 | 0.11 | 9 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.80 | 0.05 | 9 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.89 | 0.02 | 9 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.83 | 0.04 | 9 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.71 | 0.11 | 9 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.77 | 0.07 | 9 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.79 | 0.06 | 9 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os02g0754700 | Similar to Histidyl-tRNA synthetase (EC 6.1.1.21). | 0.96 | 0.00 | 9 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.87 | 0.03 | 10 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.80 | 0.05 | 10 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.75 | 0.09 | 10 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.85 | 0.03 | 10 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.83 | 0.04 | 10 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.89 | 0.02 | 10 | NA | Folate | NA |
| Os05g0517500 | GGH | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.71 | 0.11 | 10 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.79 | 0.06 | 10 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.76 | 0.08 | 10 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os03g0256400 | Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)]. | 0.73 | 0.10 | 10 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.93 | 0.01 | 9 | NA | Folate | OsUBC41 |
| Os10g0503200 | FPGS | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.79 | 0.06 | 9 | NA | Folate | OsUBC41 |
| Os03g0111100 | FPGS | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.71 | 0.12 | 9 | NA | Folate | OsUBC41 |
| Os06g0699700 | ADCS | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.78 | 0.07 | 9 | NA | Folate | OsUBC41 |
| Os04g0662700 | GTPCHI | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.84 | 0.04 | 9 | NA | Folate | OsUBC41 |
| Os11g0484400 | DHFR | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.96 | 0.00 | 9 | NA | Folate | OsUBC41 |
| Os02g0273100 | ADCL | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.75 | 0.08 | 9 | NA | Folate | OsUBC41 |
| Os09g0553300 | DHNP3 | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.84 | 0.03 | 9 | NA | Folate | OsUBC41 |
| Os12g0623800 | DHFS | Os05g0557600 | Ubiquitin-conjugating enzyme/RWD-like domain containing protein. | 0.80 | 0.06 | 9 | NA | Folate | OsUBC41 |
| Os11g0484400 | DHFR | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.78 | 0.07 | 9 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.88 | 0.02 | 9 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.81 | 0.05 | 9 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.77 | 0.07 | 9 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.96 | 0.00 | 9 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.72 | 0.10 | 9 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.71 | 0.11 | 9 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.81 | 0.05 | 9 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os07g0631000 | Defective in cullin neddylation domain containing protein. | 0.74 | 0.09 | 9 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.75 | 0.09 | 9 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.96 | 0.00 | 9 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.75 | 0.09 | 9 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.82 | 0.05 | 9 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.94 | 0.01 | 9 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.72 | 0.11 | 9 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.81 | 0.05 | 9 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.72 | 0.11 | 9 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os08g0300700 | Pentatricopeptide repeat domain containing protein. | 0.81 | 0.05 | 9 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os09g0429000 | Similar to Glutamate receptor. | 0.78 | 0.07 | 10 | NA | Folate | OsGLR2.2 |
| Os04g0662700 | GTPCHI | Os09g0429000 | Similar to Glutamate receptor. | 0.76 | 0.08 | 10 | NA | Folate | OsGLR2.2 |
| Os10g0503200 | FPGS | Os09g0429000 | Similar to Glutamate receptor. | 0.91 | 0.01 | 10 | NA | Folate | OsGLR2.2 |
| Os03g0111100 | FPGS | Os09g0429000 | Similar to Glutamate receptor. | 0.85 | 0.03 | 10 | NA | Folate | OsGLR2.2 |
| Os07g0618500 | DHPS/HPPK | Os09g0429000 | Similar to Glutamate receptor. | 0.79 | 0.06 | 10 | NA | Folate | OsGLR2.2 |
| Os06g0699700 | ADCS | Os09g0429000 | Similar to Glutamate receptor. | 0.70 | 0.12 | 10 | NA | Folate | OsGLR2.2 |
| Os11g0484400 | DHFR | Os09g0429000 | Similar to Glutamate receptor. | 0.82 | 0.04 | 10 | NA | Folate | OsGLR2.2 |
| Os02g0273100 | ADCL | Os09g0429000 | Similar to Glutamate receptor. | 0.71 | 0.12 | 10 | NA | Folate | OsGLR2.2 |
| Os05g0517500 | GGH | Os09g0429000 | Similar to Glutamate receptor. | 0.71 | 0.11 | 10 | NA | Folate | OsGLR2.2 |
| Os12g0623800 | DHFS | Os09g0429000 | Similar to Glutamate receptor. | 0.90 | 0.01 | 10 | NA | Folate | OsGLR2.2 |
| Os02g0273100 | ADCL | Os10g0394200 | Similar to subtilase family protein. | 0.73 | 0.10 | 7 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os10g0394200 | Similar to subtilase family protein. | 0.79 | 0.06 | 7 | NA | Folate | NA |
| Os06g0154600 | DHNA | Os10g0394200 | Similar to subtilase family protein. | 0.73 | 0.10 | 7 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os10g0394200 | Similar to subtilase family protein. | 0.83 | 0.04 | 7 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os10g0394200 | Similar to subtilase family protein. | 0.75 | 0.09 | 7 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os10g0394200 | Similar to subtilase family protein. | 0.72 | 0.10 | 7 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os10g0394200 | Similar to subtilase family protein. | 0.97 | 0.00 | 7 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.81 | 0.05 | 9 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.71 | 0.12 | 9 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.76 | 0.08 | 9 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.76 | 0.08 | 9 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.70 | 0.12 | 9 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.82 | 0.05 | 9 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.87 | 0.02 | 9 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.97 | 0.00 | 9 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os10g0467200 | Peroxisome assembly, p12 domain containing protein. | 0.79 | 0.06 | 9 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.72 | 0.10 | 10 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.75 | 0.08 | 10 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.88 | 0.02 | 10 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.76 | 0.08 | 10 | NA | Folate | NA |
| Os05g0517500 | GGH | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.72 | 0.11 | 10 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.81 | 0.05 | 10 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.75 | 0.09 | 10 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.92 | 0.01 | 10 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.83 | 0.04 | 10 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os12g0133700 | Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2. | 0.81 | 0.05 | 10 | NA | Folate | NA |
| Os09g0553300 | DHNP3 | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.77 | 0.07 | 10 | NA | Folate | NA |
| Os03g0111100 | FPGS | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.86 | 0.03 | 10 | NA | Folate | NA |
| Os04g0662700 | GTPCHI | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.73 | 0.10 | 10 | NA | Folate | NA |
| Os12g0623800 | DHFS | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.88 | 0.02 | 10 | NA | Folate | NA |
| Os11g0484400 | DHFR | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.82 | 0.04 | 10 | NA | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.79 | 0.06 | 10 | NA | Folate | NA |
| Os10g0503200 | FPGS | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.89 | 0.02 | 10 | NA | Folate | NA |
| Os02g0273100 | ADCL | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.74 | 0.09 | 10 | NA | Folate | NA |
| Os06g0699700 | ADCS | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.71 | 0.12 | 10 | NA | Folate | NA |
| Os05g0517500 | GGH | Os12g0498700 | Mannosyltransferase, PIG-V family protein. | 0.71 | 0.11 | 10 | NA | Folate | NA |
| Os11g0530600 | CHS | Os01g0141000 | AP2/ERF and B3 domain-containing protein, Salt stress response | 0.82 | 0.05 | 4 | RAV | Flavonoid | OsRAV2 |
| Os04g0630800 | ANR | Os01g0201700 | Transcription factor, Floral organ development, Lodicule development, Stamen specification, Floral meristem determinacy, Male reproductive development;Similar to M23 protein (Fragment). | 0.86 | 0.03 | 4 | MIKC_MADS | Flavonoid | OSMADS3 |
| Os02g0626100 | PAL | Os01g0201700 | Transcription factor, Floral organ development, Lodicule development, Stamen specification, Floral meristem determinacy, Male reproductive development;Similar to M23 protein (Fragment). | 0.93 | 0.01 | 4 | MIKC_MADS | Flavonoid | OSMADS3 |
| Os01g0372500 | LDOX | Os01g0626400 | WRKY transcription factor, Control of flowering time and plant height;WRKY transcription factor, Splicing variant | 0.84 | 0.04 | 4 | WRKY | Flavonoid | OsWRKY11 |
| Os01g0372500 | LDOX | Os01g0730700 | WRKY transcription factor 14 (WRKY14). | 0.83 | 0.04 | 5 | WRKY | Flavonoid | OsWRKY14|OsWRKY33 |
| Os01g0633500 | DFR | Os01g0730700 | WRKY transcription factor 14 (WRKY14). | 0.74 | 0.09 | 5 | WRKY | Flavonoid | OsWRKY14|OsWRKY33 |
| Os06g0192100 | UGT | Os01g0734000 | Similar to WRKY DNA binding protein. | 0.77 | 0.07 | 3 | WRKY | Flavonoid | OsWRKY23 |
| Os04g0662600 | F3H | Os01g0734000 | Similar to WRKY DNA binding protein. | 0.86 | 0.03 | 3 | WRKY | Flavonoid | OsWRKY23 |
| Os02g0177600 | 4CL | Os01g0750100 | Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13).;Similar to WRKY13 transcription factor.;Transcriptional repressor, Regulation of abiotic and biotic stress signaling pathway | 0.83 | 0.04 | 6 | WRKY | Flavonoid | OsWRKY13|WRKY13 |
| Os06g0192100 | UGT | Os01g0752500 | APETELA2/ethylene response factor (AP2/ERF) type transcription factor, Negative regulation of disease resistance, Negative regulation of salt tolerance | 0.75 | 0.08 | 6 | ERF | Flavonoid | OsERF922 |
| Os11g0530600 | CHS | Os01g0816100 | Similar to NAC domain protein. | 0.81 | 0.05 | 11 | NAC | Flavonoid | OsNAC4 |
| Os10g0320100 | F3'H | Os01g0826400 | WRKY transcription factor 24 (WRKY24). | 0.78 | 0.07 | 11 | WRKY | Flavonoid | OsWRKY24 |
| Os01g0372500 | LDOX | Os01g0826400 | WRKY transcription factor 24 (WRKY24). | 0.90 | 0.01 | 11 | WRKY | Flavonoid | OsWRKY24 |
| Os01g0633500 | DFR | Os01g0883100 | Similar to PISTILLATA-like MADS box protein. | 0.78 | 0.07 | 7 | MIKC_MADS | Flavonoid | OsMADS2 |
| Os01g0633500 | DFR | Os01g0886200 | Similar to AGAMOUS homolog. | 0.94 | 0.00 | 4 | MIKC_MADS | Flavonoid | OsMADS21 |
| Os11g0530600 | CHS | Os01g0968800 | Similar to Dehydration responsive element binding protein 1F (DREB1F protein). | 0.84 | 0.03 | 4 | ERF | Flavonoid | OsDREB1F|RCBF2 |
| Os04g0630800 | ANR | Os02g0170300 | MADS box transcription factor, Regulator of early seed development | 0.11 | 0.00 | 2 | MIKC_MADS | Flavonoid | OsMADS29 |
| Os01g0372500 | LDOX | Os02g0181300 | WRKY transcription factor, Defense response | 0.88 | 0.02 | 12 | WRKY | Flavonoid | OsWRKY71 |
| Os06g0192100 | UGT | Os02g0462800 | WRKY transcription factor 42, Transcriptional repressor, Promotion of leaf senescence | 0.87 | 0.03 | 4 | WRKY | Flavonoid | OsWRKY42|WRKY42 |
| Os04g0662600 | F3H | Os02g0462800 | WRKY transcription factor 42, Transcriptional repressor, Promotion of leaf senescence | 0.87 | 0.03 | 4 | WRKY | Flavonoid | OsWRKY42|WRKY42 |
| Os01g0372500 | LDOX | Os02g0656600 | Similar to Dehydration responsive element binding protein 2B (DREB2B protein). | 0.84 | 0.04 | 8 | ERF | Flavonoid | OsDREB4-1|CR223 |
| Os06g0192100 | UGT | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.85 | 0.03 | 8 | NF-YB | Flavonoid | OsNF-YB1 |
| Os10g0320100 | F3'H | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.71 | 0.11 | 8 | NF-YB | Flavonoid | OsNF-YB1 |
| Os04g0662600 | F3H | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.97 | 0.00 | 8 | NF-YB | Flavonoid | OsNF-YB1 |
| Os03g0819600 | CHI | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.82 | 0.05 | 8 | NF-YB | Flavonoid | OsNF-YB1 |
| Os01g0372500 | LDOX | Os02g0766700 | bZIP transcription factor, Regulation of ABA signaling and biosynthesis, Drought resistance | 0.73 | 0.10 | 8 | bZIP | Flavonoid | OsbZIP23 |
| Os05g0320700 | C4H | Os02g0766700 | bZIP transcription factor, Regulation of ABA signaling and biosynthesis, Drought resistance | 0.82 | 0.04 | 8 | bZIP | Flavonoid | OsbZIP23 |
| Os04g0630800 | ANR | Os03g0183000 | APETALA2/ethylene-responsive element binding protein 125, Transcription regulator, Positive regulator of grain length;Similar to Root abundant factor.;Similar to AP2 domain containing protein RAP2.6 (Fragment). | 0.73 | 0.00 | 6 | ERF | Flavonoid | OsRAF|OsLG3 |
| Os04g0662600 | F3H | Os03g0327800 | NAC Family transcriptional activator, Abiotic stress response, Positive regulator of leaf senescence | 0.74 | 0.09 | 4 | NAC | Flavonoid | OsNAP |
| Os03g0819600 | CHI | Os03g0782500 | Phytochrome-interacting factor-like bHLH protein, Stress-responsive transcription factor, Regulator of reduced internode elongation under drought conditions | 0.77 | 0.08 | 6 | bHLH | Flavonoid | OsPIL13|OsPIL1 |
| Os02g0177600 | 4CL | Os03g0782500 | Phytochrome-interacting factor-like bHLH protein, Stress-responsive transcription factor, Regulator of reduced internode elongation under drought conditions | 0.88 | 0.02 | 6 | bHLH | Flavonoid | OsPIL13|OsPIL1 |
| Os11g0530600 | CHS | Os03g0796900 | bZIP transcription factor, Globulin gene promoter in endosperm | 0.83 | 0.04 | 5 | bZIP | Flavonoid | REB |
| Os11g0530600 | CHS | Os03g0798500 | WRKY transcription factor, Positive regulation of defense responses | 0.89 | 0.02 | 6 | WRKY | Flavonoid | OsWRKY6 |
| Os02g0177600 | 4CL | Os03g0820300 | TFIIIA-type zinc finger protein, Transcription activator, Abiotic stress tolerance | 0.72 | 0.11 | 3 | C2H2 | Flavonoid | ZFP182|ZOS3-21 |
| Os02g0177600 | 4CL | Os03g0820400 | Similar to ZPT2-13. | 0.94 | 0.01 | 5 | C2H2 | Flavonoid | ZFP15 |
| Os04g0662600 | F3H | Os03g0820400 | Similar to ZPT2-13. | 0.78 | 0.07 | 5 | C2H2 | Flavonoid | ZFP15 |
| Os11g0530600 | CHS | Os04g0194600 | Similar to PCF1. | 0.71 | 0.11 | 4 | TCP | Flavonoid | PCF1 |
| Os03g0819600 | CHI | Os04g0287400 | WRKY transcription factor, Positive regulator in defense response, Negative regulator in GA signaling | 0.85 | 0.03 | 5 | WRKY | Flavonoid | OsWRKY51 |
| Os02g0177600 | 4CL | Os04g0287400 | WRKY transcription factor, Positive regulator in defense response, Negative regulator in GA signaling | 0.88 | 0.02 | 5 | WRKY | Flavonoid | OsWRKY51 |
| Os03g0819600 | CHI | Os04g0350700 | Basic helix-loop-helix protein, Regulation of awn development, grain size, and grain number | 0.86 | 0.03 | 10 | bHLH | Flavonoid | An-1 |
| Os02g0177600 | 4CL | Os04g0350700 | Basic helix-loop-helix protein, Regulation of awn development, grain size, and grain number | 0.92 | 0.01 | 10 | bHLH | Flavonoid | An-1 |
| Os10g0320100 | F3'H | Os04g0350700 | Basic helix-loop-helix protein, Regulation of awn development, grain size, and grain number | 0.71 | 0.12 | 10 | bHLH | Flavonoid | An-1 |
| Os04g0662600 | F3H | Os04g0350700 | Basic helix-loop-helix protein, Regulation of awn development, grain size, and grain number | 0.71 | 0.11 | 10 | bHLH | Flavonoid | An-1 |
| Os03g0819600 | CHI | Os04g0460600 | NAC transcription factor, Regulation of shoot branching, plant height and flowering time;Similar to H0219H12.10 protein. | 0.71 | 0.11 | 4 | NAC | Flavonoid | OsNAC2|OsTIL1|OMTN2|OsORE1 |
| Os02g0626100 | PAL | Os04g0460600 | NAC transcription factor, Regulation of shoot branching, plant height and flowering time;Similar to H0219H12.10 protein. | 0.92 | 0.01 | 4 | NAC | Flavonoid | OsNAC2|OsTIL1|OMTN2|OsORE1 |
| Os11g0530600 | CHS | Os04g0546800 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.89 | 0.02 | 6 | ERF | Flavonoid | OsERF1 |
| Os03g0819600 | CHI | Os04g0549700 | Similar to Dehydration responsive element binding protein 1F (DREB1F protein). | 0.71 | 0.11 | 6 | ERF | Flavonoid | OsDREB4-2|CR250 |
| Os10g0320100 | F3'H | Os04g0549700 | Similar to Dehydration responsive element binding protein 1F (DREB1F protein). | 0.80 | 0.06 | 6 | ERF | Flavonoid | OsDREB4-2|CR250 |
| Os01g0633500 | DFR | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | 1.00 | 0.00 | 8 | bHLH_Kala4 | Flavonoid | Kala4|OsS1 |
| Os01g0372500 | LDOX | Os04g0569100 | Similar to OCL1 homeobox protein.;Homeodomain-leucine zipper IV protein, GL2-type homeobox protein, Transcription factor, Promotion of flowering time preferentially under long days, Positive regulation of cuticular wax biosynthesis, Drought stress response | 0.86 | 0.03 | 10 | HD-ZIP | Flavonoid | ROC4 |
| Os05g0320700 | C4H | Os04g0569100 | Similar to OCL1 homeobox protein.;Homeodomain-leucine zipper IV protein, GL2-type homeobox protein, Transcription factor, Promotion of flowering time preferentially under long days, Positive regulation of cuticular wax biosynthesis, Drought stress response | 0.71 | 0.11 | 10 | HD-ZIP | Flavonoid | ROC4 |
| Os06g0192100 | UGT | Os04g0572400 | Similar to CRT/DRE binding factor 1. | 0.84 | 0.04 | 2 | ERF | Flavonoid | OsDREB1E|OsDREB1-1|CR350 |
| Os04g0662600 | F3H | Os04g0572400 | Similar to CRT/DRE binding factor 1. | 0.96 | 0.00 | 2 | ERF | Flavonoid | OsDREB1E|OsDREB1-1|CR350 |
| Os05g0320700 | C4H | Os04g0610400 | APETALA-2-like transcription Factor, Control of the abscisic acid (ABA)/gibberellin (GA) balance | 0.79 | 0.06 | 3 | ERF | Flavonoid | OsAP2-39 |
| Os04g0630800 | ANR | Os04g0637000 | Similar to BZIP transcription factor bZIP52.;Similar to Basic leucine zipper protein (Liguleless2). | 0.75 | 0.00 | 4 | bZIP | Flavonoid | OsTGAP1|OsbZIP37 |
| Os02g0626100 | PAL | Os05g0343400 | WRKY transcription factor, Disease resistance, Defense response | 0.84 | 0.04 | 10 | WRKY | Flavonoid | OsWRKY53 |
| Os11g0530600 | CHS | Os05g0343400 | WRKY transcription factor, Disease resistance, Defense response | 0.04 | 0.00 | 10 | WRKY | Flavonoid | OsWRKY53 |
| Os01g0633500 | DFR | Os05g0421600 | No apical meristem (NAM) protein domain containing protein. | 0.84 | 0.04 | 4 | NAC | Flavonoid | OsNAC52 |
| Os04g0662600 | F3H | Os05g0429900 | Similar to MybHv5 (Fragment). | 0.81 | 0.05 | 3 | MYB | Flavonoid | Osmyb1 |
| Os01g0372500 | LDOX | Os05g0463800 | CCAAT-box binding transcription factor, Chloroplast biogenesis;Similar to Nuclear transcription factor Y subunit B-3. | 0.88 | 0.02 | 11 | NF-YB | Flavonoid | OsHAP3B |
| Os10g0320100 | F3'H | Os05g0474800 | WRKY transcription factor 70. | 0.85 | 0.03 | 6 | WRKY | Flavonoid | WRKY70 |
| Os03g0819600 | CHI | Os05g0474800 | WRKY transcription factor 70. | 0.75 | 0.08 | 6 | WRKY | Flavonoid | WRKY70 |
| Os02g0177600 | 4CL | Os05g0573500 | CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.87 | 0.02 | 8 | NF-YB | Flavonoid | OsHAP3C |
| Os03g0259400 | LAR | Os06g0104200 | Similar to OsNAC7 protein. | 0.99 | 0.00 | 3 | NAC | Flavonoid | OsSWN7 |
| Os05g0320700 | C4H | Os06g0181700 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.79 | 0.06 | 2 | ERF | Flavonoid | OsERF2 |
| Os03g0259400 | LAR | Os06g0196700 | Auxin response factor, Transcription factor, Cytokinin-mediated inhibition of phosphate transport, Phosphate signaling, Auxin and phosphate starvation response;Similar to Auxin response factor 1. | 0.74 | 0.10 | 4 | ARF | Flavonoid | OsARF16 |
| Os11g0530600 | CHS | Os06g0211200 | bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance;Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). | 0.83 | 0.04 | 3 | bZIP | Flavonoid | OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1 |
| Os01g0372500 | LDOX | Os06g0226700 | Similar to PCF1. | 0.93 | 0.01 | 4 | TCP | Flavonoid | OsTCP19 |
| Os03g0819600 | CHI | Os06g0649000 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response | 0.91 | 0.01 | 15 | WRKY | Flavonoid | OsWRKY28 |
| Os04g0662600 | F3H | Os06g0649000 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response | 0.80 | 0.06 | 15 | WRKY | Flavonoid | OsWRKY28 |
| Os10g0320100 | F3'H | Os06g0649000 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response | 0.80 | 0.06 | 15 | WRKY | Flavonoid | OsWRKY28 |
| Os02g0177600 | 4CL | Os06g0649000 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response | 0.89 | 0.02 | 15 | WRKY | Flavonoid | OsWRKY28 |
| Os06g0192100 | UGT | Os06g0649000 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense response | 0.83 | 0.04 | 15 | WRKY | Flavonoid | OsWRKY28 |
| Os04g0630800 | ANR | Os06g0662200 | Basic leucine zipper (bZIP) transcription factor, Negative regulator of cold and drought stress response | 0.71 | 0.11 | 2 | bZIP | Flavonoid | OsbZIP52|RISBZ5 |
| Os02g0626100 | PAL | Os06g0662200 | Basic leucine zipper (bZIP) transcription factor, Negative regulator of cold and drought stress response | 0.95 | 0.00 | 2 | bZIP | Flavonoid | OsbZIP52|RISBZ5 |
| Os05g0320700 | C4H | Os07g0129700 | KNOTTED-type homeodomain protein, KNOX protein, Shoot formation during embryogenesis, Control of seed shattering, Control of internode development, Repression of lignin biosynthesis | 0.80 | 0.05 | 10 | TALE | Flavonoid | D6|OSH15|Oskn3 |
| Os01g0633500 | DFR | Os07g0129700 | KNOTTED-type homeodomain protein, KNOX protein, Shoot formation during embryogenesis, Control of seed shattering, Control of internode development, Repression of lignin biosynthesis | 0.81 | 0.05 | 10 | TALE | Flavonoid | D6|OSH15|Oskn3 |
| Os01g0372500 | LDOX | Os07g0143200 | Cold-induced alternative splicing variant of OsPIF14;Phytochrome-interacting bHLH factor, Cross-talk between light and stress signaling | 0.91 | 0.01 | 6 | bHLH | Flavonoid | OsPIL14|OsPIF14 |
| Os11g0530600 | CHS | Os07g0644100 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.84 | 0.04 | 6 | bZIP | Flavonoid | OsbZIP60 |
| Os11g0530600 | CHS | Os07g0680400 | WRKY transcription factor, Drought tolerance | 0.77 | 0.07 | 7 | WRKY | Flavonoid | OsWRKY47 |
| Os01g0372500 | LDOX | Os08g0187500 | Similar to Roc1. | 0.73 | 0.10 | 4 | HD-ZIP | Flavonoid | Roc1 |
| Os05g0320700 | C4H | Os08g0187500 | Similar to Roc1. | 0.73 | 0.10 | 4 | HD-ZIP | Flavonoid | Roc1 |
| Os01g0372500 | LDOX | Os08g0292900 | Similar to Isoform 2 of Homeobox protein knotted-1-like 13. | 0.93 | 0.01 | 7 | TALE | Flavonoid | OSH45 |
| Os10g0320100 | F3'H | Os08g0292900 | Similar to Isoform 2 of Homeobox protein knotted-1-like 13. | 0.72 | 0.11 | 7 | TALE | Flavonoid | OSH45 |
| Os04g0662600 | F3H | Os08g0531700 | Similar to MADS-box transcription factor 7. | 0.80 | 0.06 | 4 | MIKC_MADS | Flavonoid | OsMADS7|OsMADS45 |
| Os03g0819600 | CHI | Os08g0544800 | PCF2. | 0.90 | 0.02 | 6 | TCP | Flavonoid | PCF2|OsPCF2 |
| Os10g0320100 | F3'H | Os08g0544800 | PCF2. | 0.96 | 0.00 | 6 | TCP | Flavonoid | PCF2|OsPCF2 |
| Os06g0192100 | UGT | Os08g0544800 | PCF2. | 0.94 | 0.00 | 6 | TCP | Flavonoid | PCF2|OsPCF2 |
| Os04g0662600 | F3H | Os08g0544800 | PCF2. | 0.79 | 0.06 | 6 | TCP | Flavonoid | PCF2|OsPCF2 |
| Os04g0662600 | F3H | Os09g0417800 | Splicing variant of OsWRKY62, Pathogen defense;WRKY transcription factor, Transcriptional repressor, Pathogen defense | 0.82 | 0.05 | 5 | WRKY | Flavonoid | OsWRKY62 |
| Os11g0530600 | CHS | Os09g0457900 | AP2/ERF transcription factor, Regulation of the internode elongation | 0.89 | 0.02 | 4 | ERF | Flavonoid | OsEATB |
| Os01g0372500 | LDOX | Os09g0474000 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.87 | 0.03 | 7 | bZIP | Flavonoid | OsTFX1 |
| Os11g0530600 | CHS | Os09g0489500 | bZIP transcription factor, Tapetum development;Similar to DNA binding protein. | 0.79 | 0.06 | 6 | bZIP | Flavonoid | OsTGA10 |
| Os01g0633500 | DFR | Os09g0507200 | MADS box protein. | 0.79 | 0.06 | 11 | MIKC_MADS | Flavonoid | OsMADS8|OsMADS24 |
| Os05g0320700 | C4H | Os09g0507200 | MADS box protein. | 0.75 | 0.09 | 11 | MIKC_MADS | Flavonoid | OsMADS8|OsMADS24 |
| Os01g0372500 | LDOX | Os09g0510500 | Basic helix-loop-helix (bHLH) transcriptional activator, Control of leaf angle and grain size | 0.87 | 0.02 | 11 | bHLH | Flavonoid | OsBC1 |
| Os04g0662600 | F3H | Os09g0522000 | Similar to Dehydration-responsive element-binding protein 1B. | 0.81 | 0.05 | 5 | ERF | Flavonoid | OsDREB1B |
| Os03g0819600 | CHI | Os09g0522000 | Similar to Dehydration-responsive element-binding protein 1B. | 0.79 | 0.06 | 5 | ERF | Flavonoid | OsDREB1B |
| Os11g0530600 | CHS | Os09g0522200 | DRE-binding protein 1A. | 0.91 | 0.01 | 4 | ERF | Flavonoid | OsDREB1A|OsDREBL|OsCBF3 |
| Os02g0177600 | 4CL | Os10g0536100 | MIKC-type MADS-box protein, Long day (LD)-specific negative regulator of flowering | 0.93 | 0.01 | 5 | MIKC_MADS | Flavonoid | OsMADS56 |
| Os11g0530600 | CHS | Os10g0575000 | JAZ-interacting transcription factor, Positive regulator of jasmonate (JA) signaling pathway, Bacterial blight resistance, Spikelet development | 0.78 | 0.07 | 6 | bHLH | Flavonoid | OsMYC2 |
| Os01g0633500 | DFR | Os11g0126900 | NAC-domain protein, Drought tolerance | 0.93 | 0.01 | 3 | NAC | Flavonoid | ONAC122|OsNAC10 |
| Os10g0320100 | F3'H | Os11g0184900 | Similar to OsNAC5 protein [imported]-rice.;NAC-type transcription factor, Regulation of stress-inducible genes, Stress tolerance | 0.90 | 0.01 | 9 | NAC | Flavonoid | OsNAC5 |
| Os06g0192100 | UGT | Os11g0184900 | Similar to OsNAC5 protein [imported]-rice.;NAC-type transcription factor, Regulation of stress-inducible genes, Stress tolerance | 0.71 | 0.12 | 9 | NAC | Flavonoid | OsNAC5 |
| Os03g0819600 | CHI | Os11g0184900 | Similar to OsNAC5 protein [imported]-rice.;NAC-type transcription factor, Regulation of stress-inducible genes, Stress tolerance | 0.82 | 0.04 | 9 | NAC | Flavonoid | OsNAC5 |
| Os02g0177600 | 4CL | Os11g0184900 | Similar to OsNAC5 protein [imported]-rice.;NAC-type transcription factor, Regulation of stress-inducible genes, Stress tolerance | 0.78 | 0.07 | 9 | NAC | Flavonoid | OsNAC5 |
| Os11g0530600 | CHS | Os11g0490900 | Similar to WRKY transcription factor 72. | 0.87 | 0.02 | 4 | WRKY | Flavonoid | OsWRKY72 |
| Os11g0530600 | CHS | Os12g0123700 | NAC domain containing transcription factor, Abiotic and biotic stress response | 0.88 | 0.02 | 5 | NAC | Flavonoid | ONAC131 |
| Os04g0630800 | ANR | Os12g0152900 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.16 | 0.00 | 9 | bZIP | Flavonoid | OsTGA912 |
| Os01g0372500 | LDOX | Os12g0152900 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.73 | 0.10 | 9 | bZIP | Flavonoid | OsTGA912 |
| Os04g0662600 | F3H | Os12g0207000 | Transcription factor. | 0.78 | 0.07 | 3 | MIKC_MADS | Flavonoid | OsMADS13 |
| Os11g0530600 | CHS | Os12g0233800 | Similar to DNA-binding factor of bZIP class. | 0.75 | 0.09 | 6 | bZIP | Flavonoid | OsZIP-1a|OsbZIP86 |
| Os02g0626100 | PAL | Os12g0583700 | Zinc finger, C2H2-type domain containing protein. | 0.73 | 0.10 | 4 | C2H2 | Flavonoid | ZFP252|RZF71 |
| Os11g0530600 | CHS | Os12g0583700 | Zinc finger, C2H2-type domain containing protein. | 0.71 | 0.12 | 4 | C2H2 | Flavonoid | ZFP252|RZF71 |
| Os01g0633500 | DFR | Os01g0104200 | No apical meristem (NAM) protein domain containing protein. | 0.99 | 0.00 | 2 | NAC | Flavonoid | NA |
| Os06g0192100 | UGT | Os01g0182700 | Similar to WRKY12. | 0.73 | 0.10 | 7 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os01g0182700 | Similar to WRKY12. | 0.79 | 0.06 | 7 | WRKY | Flavonoid | NA |
| Os02g0626100 | PAL | Os01g0182700 | Similar to WRKY12. | 0.76 | 0.08 | 7 | WRKY | Flavonoid | NA |
| Os06g0192100 | UGT | Os01g0185900 | Similar to WRKY 1 (Fragment). | 0.94 | 0.01 | 11 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os01g0185900 | Similar to WRKY 1 (Fragment). | 0.84 | 0.04 | 11 | WRKY | Flavonoid | NA |
| Os04g0662600 | F3H | Os01g0185900 | Similar to WRKY 1 (Fragment). | 0.88 | 0.02 | 11 | WRKY | Flavonoid | NA |
| Os10g0320100 | F3'H | Os01g0185900 | Similar to WRKY 1 (Fragment). | 0.74 | 0.09 | 11 | WRKY | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0186000 | Similar to WRKY transcription factor 10. | 0.71 | 0.12 | 8 | WRKY | Flavonoid | NA |
| Os04g0630800 | ANR | Os01g0242200 | Zinc finger, C2H2-type domain containing protein. | 0.71 | 0.11 | 2 | C2H2 | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0246700 | Similar to WRKY transcription factor 1. | 0.88 | 0.02 | 6 | WRKY | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0289600 | Similar to WRKY transcription factor 28. | 0.90 | 0.01 | 4 | WRKY | Flavonoid | NA |
| Os11g0530600 | CHS | Os01g0313300 | Similar to EREBP-3 protein (Fragment). | 0.82 | 0.05 | 4 | ERF | Flavonoid | NA |
| Os02g0626100 | PAL | Os01g0584900 | WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77). | 0.79 | 0.06 | 10 | WRKY | Flavonoid | NA |
| Os02g0177600 | 4CL | Os01g0584900 | WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77). | 0.72 | 0.10 | 10 | WRKY | Flavonoid | NA |
| Os06g0192100 | UGT | Os01g0584900 | WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77). | 0.76 | 0.08 | 10 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os01g0584900 | WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77). | 0.82 | 0.05 | 10 | WRKY | Flavonoid | NA |
| Os10g0320100 | F3'H | Os01g0584900 | WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77). | 0.83 | 0.04 | 10 | WRKY | Flavonoid | NA |
| Os01g0633500 | DFR | Os01g0656400 | Similar to WRKY transcription factor 15. | 0.83 | 0.04 | 2 | WRKY | Flavonoid | NA |
| Os04g0630800 | ANR | Os01g0745700 | Similar to GATA transcription factor 3 (AtGATA-3).;Hypothetical conserved gene. | 0.80 | 0.05 | 3 | GATA | Flavonoid | NA |
| Os02g0177600 | 4CL | Os01g0821600 | WRKY transcription factor 48-like protein (WRKY transcription factor 21). | 0.93 | 0.01 | 6 | WRKY | Flavonoid | NA |
| Os04g0662600 | F3H | Os01g0821600 | WRKY transcription factor 48-like protein (WRKY transcription factor 21). | 0.79 | 0.06 | 6 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os01g0838600 | Zinc finger, C2H2-like domain containing protein. | 0.80 | 0.05 | 2 | C2H2 | Flavonoid | NA |
| Os02g0177600 | 4CL | Os01g0838600 | Zinc finger, C2H2-like domain containing protein. | 0.77 | 0.08 | 2 | C2H2 | Flavonoid | NA |
| Os02g0626100 | PAL | Os01g0874300 | Similar to MybHv5 (Fragment). | 0.86 | 0.03 | 7 | MYB | Flavonoid | NA |
| Os04g0630800 | ANR | Os01g0874300 | Similar to MybHv5 (Fragment). | 0.74 | 0.10 | 7 | MYB | Flavonoid | NA |
| Os10g0320100 | F3'H | Os01g0900800 | Similar to BHLH transcription factor (Fragment).;Helix-loop-helix DNA-binding domain containing protein. | 0.79 | 0.06 | 6 | bHLH | Flavonoid | NA |
| Os01g0372500 | LDOX | Os01g0922600 | Similar to SBP-domain protein 4. | 0.86 | 0.03 | 8 | SBP | Flavonoid | NA |
| Os02g0177600 | 4CL | Os02g0128200 | Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1). | 0.82 | 0.05 | 4 | bZIP | Flavonoid | NA |
| Os03g0819600 | CHI | Os02g0128200 | Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1). | 0.74 | 0.09 | 4 | bZIP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os02g0174100 | Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;SBP domain containing protein. | 0.80 | 0.06 | 8 | SBP | Flavonoid | NA |
| Os11g0530600 | CHS | Os02g0194900 | Basic-leucine zipper (bZIP) transcription factor domain containing protein. | 0.82 | 0.05 | 4 | bZIP | Flavonoid | NA |
| Os04g0630800 | ANR | Os02g0194900 | Basic-leucine zipper (bZIP) transcription factor domain containing protein. | 0.78 | 0.00 | 4 | bZIP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os02g0546600 | Similar to AP2 domain containing protein RAP2.2 (Fragment). | 0.85 | 0.03 | 5 | ERF | Flavonoid | NA |
| Os10g0320100 | F3'H | Os02g0546600 | Similar to AP2 domain containing protein RAP2.2 (Fragment). | 0.77 | 0.07 | 5 | ERF | Flavonoid | NA |
| Os05g0320700 | C4H | Os02g0546600 | Similar to AP2 domain containing protein RAP2.2 (Fragment). | 0.74 | 0.09 | 5 | ERF | Flavonoid | NA |
| Os04g0630800 | ANR | Os02g0564700 | Similar to BHLH transcription factor. | 0.76 | 0.08 | 6 | bHLH | Flavonoid | NA |
| Os03g0259400 | LAR | Os02g0565600 | Similar to Homeodomain leucine zipper protein (Fragment). | 0.73 | 0.10 | 5 | HD-ZIP | Flavonoid | NA |
| Os05g0320700 | C4H | Os02g0635800 | Transcription factor, TCP domain containing protein. | 0.75 | 0.08 | 2 | TCP | Flavonoid | NA |
| Os06g0192100 | UGT | Os02g0645600 | Similar to AG-motif binding protein-3. | 0.77 | 0.07 | 3 | GATA | Flavonoid | NA |
| Os04g0662600 | F3H | Os02g0677300 | Similar to CRT/DRE binding factor 1. | 0.86 | 0.03 | 2 | ERF | Flavonoid | NA |
| Os11g0530600 | CHS | Os02g0680700 | Similar to DNA binding protein. | 0.74 | 0.09 | 4 | MYB_related | Flavonoid | NA |
| Os01g0372500 | LDOX | Os02g0726700 | Helix-loop-helix DNA-binding domain containing protein. | 0.79 | 0.06 | 6 | bHLH | Flavonoid | NA |
| Os01g0372500 | LDOX | Os02g0747400 | Similar to PCF1. | 0.85 | 0.03 | 6 | TCP | Flavonoid | NA |
| Os05g0320700 | C4H | Os02g0747400 | Similar to PCF1. | 0.72 | 0.11 | 6 | TCP | Flavonoid | NA |
| Os01g0633500 | DFR | Os02g0770500 | Similar to WRKY transcription factor 32. | 0.93 | 0.01 | 3 | WRKY | Flavonoid | NA |
| Os03g0259400 | LAR | Os03g0127500 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.71 | 0.11 | 3 | bZIP | Flavonoid | NA |
| Os11g0530600 | CHS | Os03g0174400 | Hypothetical conserved gene. | 0.73 | 0.10 | 5 | ERF | Flavonoid | NA |
| Os01g0372500 | LDOX | Os03g0191000 | Similar to CG-1 protein (Fragment). | 0.81 | 0.05 | 4 | CAMTA | Flavonoid | NA |
| Os02g0177600 | 4CL | Os03g0224200 | Similar to response regulator 8.;B-type response regulator, Cytokinin signaling | 0.07 | 0.00 | 7 | ARR-B | Flavonoid | NA |
| Os01g0372500 | LDOX | Os03g0728900 | Helix-loop-helix DNA-binding domain containing protein. | 0.99 | 0.00 | 8 | bHLH | Flavonoid | NA |
| Os10g0320100 | F3'H | Os03g0728900 | Helix-loop-helix DNA-binding domain containing protein. | 0.77 | 0.07 | 8 | bHLH | Flavonoid | NA |
| Os02g0177600 | 4CL | Os03g0758000 | Similar to WRKY23 transcription factor (Fragment). | 0.83 | 0.04 | 4 | WRKY | Flavonoid | NA |
| Os04g0630800 | ANR | Os03g0758000 | Similar to WRKY23 transcription factor (Fragment). | 0.93 | 0.01 | 4 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os03g0758000 | Similar to WRKY23 transcription factor (Fragment). | 0.71 | 0.12 | 4 | WRKY | Flavonoid | NA |
| Os01g0372500 | LDOX | Os03g0785800 | Transcription factor , Cold tolerance | 0.92 | 0.01 | 11 | TCP | Flavonoid | NA |
| Os05g0320700 | C4H | Os03g0785800 | Transcription factor , Cold tolerance | 0.83 | 0.04 | 11 | TCP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os03g0855100 | Similar to WRKY transcription factor 12. | 0.84 | 0.04 | 6 | WRKY | Flavonoid | NA |
| Os02g0626100 | PAL | Os04g0547600 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.91 | 0.01 | 6 | ERF | Flavonoid | NA |
| Os02g0177600 | 4CL | Os04g0547600 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.71 | 0.11 | 6 | ERF | Flavonoid | NA |
| Os06g0192100 | UGT | Os04g0669200 | Similar to Ethylene response factor 2 (Ethylene response factor 3). | 0.74 | 0.09 | 3 | ERF | Flavonoid | NA |
| Os02g0177600 | 4CL | Os04g0669200 | Similar to Ethylene response factor 2 (Ethylene response factor 3). | 0.73 | 0.10 | 3 | ERF | Flavonoid | NA |
| Os04g0662600 | F3H | Os04g0676600 | Similar to H0101F08.6 protein. | 0.78 | 0.00 | 2 | B3 | Flavonoid | NA |
| Os01g0372500 | LDOX | Os05g0103000 | Similar to MYC1. | 0.75 | 0.09 | 7 | bHLH | Flavonoid | NA |
| Os01g0372500 | LDOX | Os05g0155400 | Zinc finger, NHR/GATA-type domain containing protein. | 0.88 | 0.02 | 5 | GATA | Flavonoid | NA |
| Os11g0530600 | CHS | Os05g0437700 | Similar to G-box-binding factor 4. | 0.73 | 0.10 | 3 | bZIP | Flavonoid | NA |
| Os11g0530600 | CHS | Os05g0473300 | Hypothetical conserved gene. | 0.77 | 0.07 | 3 | ERF | Flavonoid | NA |
| Os04g0662600 | F3H | Os05g0571200 | Similar to WRKY transcription factor 19. | 0.79 | 0.06 | 6 | WRKY | Flavonoid | NA |
| Os01g0372500 | LDOX | Os06g0158100 | Similar to WRKY transcription factor 63. | 0.83 | 0.04 | 8 | WRKY | Flavonoid | NA |
| Os10g0320100 | F3'H | Os06g0158100 | Similar to WRKY transcription factor 63. | 0.72 | 0.11 | 8 | WRKY | Flavonoid | NA |
| Os01g0372500 | LDOX | Os06g0265400 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.93 | 0.01 | 10 | bZIP | Flavonoid | NA |
| Os04g0662600 | F3H | Os06g0530400 | Similar to NAC domain-containing protein 76. | 0.76 | 0.08 | 4 | NAC | Flavonoid | NA |
| Os03g0819600 | CHI | Os06g0530400 | Similar to NAC domain-containing protein 76. | 0.71 | 0.11 | 4 | NAC | Flavonoid | NA |
| Os02g0626100 | PAL | Os06g0614100 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.81 | 0.05 | 3 | bZIP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os06g0663500 | SBP domain containing protein. | 0.75 | 0.08 | 8 | SBP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os06g0669700 | Similar to DNA binding protein. | 0.81 | 0.05 | 7 | MYB_related | Flavonoid | NA |
| Os10g0320100 | F3'H | Os06g0703500 | Similar to Squamosa promoter-binding-like protein 12.;Similar to SBP-domain protein 5 (Fragment). | 0.85 | 0.03 | 4 | SBP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os07g0566500 | Similar to NAC domain protein. | 0.82 | 0.05 | 3 | NAC | Flavonoid | NA |
| Os01g0372500 | LDOX | Os07g0596900 | Similar to SUSIBA2-like (WRKY transcription factor 80). | 0.71 | 0.12 | 3 | WRKY | Flavonoid | NA |
| Os11g0530600 | CHS | Os07g0617000 | Similar to Ethylene response factor 2. | 0.71 | 0.11 | 3 | ERF | Flavonoid | NA |
| Os03g0819600 | CHI | Os07g0629000 | Similar to P-type R2R3 Myb protein (Fragment). | 0.72 | 0.11 | 2 | MYB | Flavonoid | NA |
| Os11g0530600 | CHS | Os07g0683200 | Similar to NAC domain transcription factor. | 0.93 | 0.01 | 5 | NAC | Flavonoid | NA |
| Os04g0630800 | ANR | Os07g0683200 | Similar to NAC domain transcription factor. | 0.27 | 0.00 | 5 | NAC | Flavonoid | NA |
| Os04g0630800 | ANR | Os08g0176900 | Hypothetical conserved gene.;Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.76 | 0.00 | 2 | bZIP | Flavonoid | NA |
| Os04g0662600 | F3H | Os08g0386200 | WRKY transcription factor 69. | 0.80 | 0.06 | 10 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os08g0386200 | WRKY transcription factor 69. | 0.91 | 0.01 | 10 | WRKY | Flavonoid | NA |
| Os02g0177600 | 4CL | Os08g0386200 | WRKY transcription factor 69. | 0.89 | 0.02 | 10 | WRKY | Flavonoid | NA |
| Os10g0320100 | F3'H | Os08g0386200 | WRKY transcription factor 69. | 0.74 | 0.09 | 10 | WRKY | Flavonoid | NA |
| Os03g0819600 | CHI | Os08g0437300 | Similar to Typical P-type R2R3 Myb protein (Fragment). | 0.80 | 0.06 | 2 | MYB | Flavonoid | NA |
| Os03g0819600 | CHI | Os08g0474000 | Similar to AP2 domain containing protein RAP2.6 (Fragment). | 0.74 | 0.09 | 2 | ERF | Flavonoid | NA |
| Os01g0633500 | DFR | Os08g0481400 | Similar to HAHB-7 (Fragment). | 0.78 | 0.07 | 8 | HD-ZIP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os08g0481400 | Similar to HAHB-7 (Fragment). | 0.84 | 0.03 | 8 | HD-ZIP | Flavonoid | NA |
| Os05g0320700 | C4H | Os08g0481400 | Similar to HAHB-7 (Fragment). | 0.85 | 0.03 | 8 | HD-ZIP | Flavonoid | NA |
| Os05g0320700 | C4H | Os08g0487100 | Similar to BZIP transcription factor BZI-2. | 0.80 | 0.06 | 6 | bZIP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os08g0490000 | Helix-loop-helix DNA-binding domain containing protein.;Similar to Transcription factor BIM2. | 0.73 | 0.10 | 5 | bHLH | Flavonoid | NA |
| Os03g0259400 | LAR | Os08g0511200 | Similar to Nam-like protein 16. | 0.71 | 0.11 | 3 | NAC | Flavonoid | NA |
| Os11g0530600 | CHS | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.76 | 0.08 | 7 | bHLH | Flavonoid | NA |
| Os03g0259400 | LAR | Os09g0447000 | Homeodomain-related domain containing protein. | 0.73 | 0.10 | 4 | HD-ZIP | Flavonoid | NA |
| Os11g0530600 | CHS | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.78 | 0.07 | 6 | bHLH | Flavonoid | NA |
| Os03g0259400 | LAR | Os09g0475400 | Similar to cDNA clone:J023084K14, full insert sequence.;Helix-loop-helix DNA-binding domain containing protein. | 0.73 | 0.10 | 3 | bHLH | Flavonoid | NA |
| Os11g0530600 | CHS | Os09g0475400 | Similar to cDNA clone:J023084K14, full insert sequence.;Helix-loop-helix DNA-binding domain containing protein. | 0.71 | 0.11 | 3 | bHLH | Flavonoid | NA |
| Os11g0530600 | CHS | Os09g0501600 | Similar to MYC1. | 0.92 | 0.01 | 3 | bHLH | Flavonoid | NA |
| Os01g0372500 | LDOX | Os09g0507100 | Similar to Squamosa-promoter binding-like protein 11. | 0.70 | 0.12 | 4 | SBP | Flavonoid | NA |
| Os01g0372500 | LDOX | Os09g0519100 | Helix-loop-helix DNA-binding domain containing protein. | 0.84 | 0.04 | 7 | bHLH | Flavonoid | NA |
| Os01g0372500 | LDOX | Os09g0522100 | Similar to Dehydration-responsive element-binding protein 1H. | 0.80 | 0.05 | 10 | ERF | Flavonoid | NA |
| Os01g0633500 | DFR | Os09g0522100 | Similar to Dehydration-responsive element-binding protein 1H. | 0.79 | 0.06 | 10 | ERF | Flavonoid | NA |
| Os11g0530600 | CHS | Os11g0168500 | Hypothetical conserved gene. | 0.71 | 0.12 | 3 | ERF | Flavonoid | NA |
| Os11g0530600 | CHS | Os12g0116400 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.75 | 0.09 | 2 | WRKY | Flavonoid | NA |
| Os04g0662600 | F3H | Os12g0175400 | Similar to OSMYB2. | 0.73 | 0.10 | 6 | MYB | Flavonoid | NA |
| Os04g0662600 | F3H | Os12g0601800 | Similar to BZIP transcription factor family protein, expressed. | 0.72 | 0.10 | 3 | bZIP | Flavonoid | NA |
| Os10g0320100 | F3'H | Os12g0616400 | Similar to Isoform 2 of Transcription factor PCF8.;Plant-specific transcription factor, miR319 target gene | 0.76 | 0.08 | 3 | TCP | Flavonoid | NA |
| Os12g0623800 | DHFS | Os01g0141000 | AP2/ERF and B3 domain-containing protein, Salt stress response | 0.80 | 0.06 | 2 | RAV | Folate | OsRAV2 |
| Os10g0503200 | FPGS | Os01g0141000 | AP2/ERF and B3 domain-containing protein, Salt stress response | 0.80 | 0.05 | 2 | RAV | Folate | OsRAV2 |
| Os04g0662700 | GTPCHI | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.84 | 0.04 | 6 | ERF | Folate | OsDREB2A |
| Os12g0623800 | DHFS | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.85 | 0.03 | 6 | ERF | Folate | OsDREB2A |
| Os09g0553300 | DHNP3 | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.75 | 0.08 | 6 | ERF | Folate | OsDREB2A |
| Os07g0618500 | DHPS/HPPK | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.93 | 0.01 | 6 | ERF | Folate | OsDREB2A |
| Os10g0503200 | FPGS | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.77 | 0.07 | 6 | ERF | Folate | OsDREB2A |
| Os11g0484400 | DHFR | Os01g0165000 | DRE binding protein 2.;Transcription factor, Dehydration and salt stress tolerance | 0.94 | 0.01 | 6 | ERF | Folate | OsDREB2A |
| Os11g0484400 | DHFR | Os01g0279900 | Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. | 0.91 | 0.01 | 5 | bZIP | Folate | OsHBP1b |
| Os04g0662700 | GTPCHI | Os01g0279900 | Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. | 0.90 | 0.01 | 5 | bZIP | Folate | OsHBP1b |
| Os09g0553300 | DHNP3 | Os01g0279900 | Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. | 0.89 | 0.02 | 5 | bZIP | Folate | OsHBP1b |
| Os12g0623800 | DHFS | Os01g0279900 | Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. | 0.83 | 0.04 | 5 | bZIP | Folate | OsHBP1b |
| Os10g0503200 | FPGS | Os01g0279900 | Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2. | 0.86 | 0.03 | 5 | bZIP | Folate | OsHBP1b |
| Os03g0111100 | FPGS | Os01g0302500 | Knotted1-type homeobox protein OSH6. | 0.98 | 0.00 | 2 | TALE | Folate | OSH6 |
| Os12g0623800 | DHFS | Os01g0302500 | Knotted1-type homeobox protein OSH6. | 0.79 | 0.06 | 2 | TALE | Folate | OSH6 |
| Os09g0553300 | DHNP3 | Os01g0658900 | OSBZ8. | 0.81 | 0.05 | 2 | bZIP | Folate | OSBZ8|OsbZIP05 |
| Os06g0699700 | ADCS | Os01g0658900 | OSBZ8. | 0.87 | 0.03 | 2 | bZIP | Folate | OSBZ8|OsbZIP05 |
| Os04g0662700 | GTPCHI | Os01g0812000 | Transcriptional activator of gibberellin-dependent alpha-amylase expression, Regulation of nutrient mobilization in germination;Similar to cDNA clone:J033109N02, full insert sequence.;Myb-like transcription factor, Induction of alpha-amylase in aleurone, Pollen development | 0.84 | 0.04 | 4 | MYB | Folate | OsMYBGA|OsGAMYB |
| Os06g0699700 | ADCS | Os01g0812000 | Transcriptional activator of gibberellin-dependent alpha-amylase expression, Regulation of nutrient mobilization in germination;Similar to cDNA clone:J033109N02, full insert sequence.;Myb-like transcription factor, Induction of alpha-amylase in aleurone, Pollen development | 0.91 | 0.01 | 4 | MYB | Folate | OsMYBGA|OsGAMYB |
| Os02g0273100 | ADCL | Os01g0812000 | Transcriptional activator of gibberellin-dependent alpha-amylase expression, Regulation of nutrient mobilization in germination;Similar to cDNA clone:J033109N02, full insert sequence.;Myb-like transcription factor, Induction of alpha-amylase in aleurone, Pollen development | 0.81 | 0.05 | 4 | MYB | Folate | OsMYBGA|OsGAMYB |
| Os11g0484400 | DHFR | Os01g0812000 | Transcriptional activator of gibberellin-dependent alpha-amylase expression, Regulation of nutrient mobilization in germination;Similar to cDNA clone:J033109N02, full insert sequence.;Myb-like transcription factor, Induction of alpha-amylase in aleurone, Pollen development | 0.92 | 0.01 | 4 | MYB | Folate | OsMYBGA|OsGAMYB |
| Os11g0484400 | DHFR | Os01g0818400 | Homeodomain-like containing protein. | 0.88 | 0.02 | 2 | WOX | Folate | OsWOX13 |
| Os02g0273100 | ADCL | Os01g0818400 | Homeodomain-like containing protein. | 0.82 | 0.04 | 2 | WOX | Folate | OsWOX13 |
| Os05g0517500 | GGH | Os01g0834400 | Similar to HAP3.;CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.85 | 0.03 | 3 | NF-YB | Folate | OsHAP3A |
| Os11g0484400 | DHFR | Os01g0834400 | Similar to HAP3.;CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.09 | 0.00 | 3 | NF-YB | Folate | OsHAP3A |
| Os03g0111100 | FPGS | Os01g0834400 | Similar to HAP3.;CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.86 | 0.03 | 3 | NF-YB | Folate | OsHAP3A |
| Os11g0484400 | DHFR | Os01g0867300 | bZIP transcription factor, Abiotic stress response, ABA signaling, Suppressor of floral transition upon drought stress | 0.84 | 0.04 | 3 | bZIP | Folate | OsABF1|OsABI5|OREB1|OsbZIP10 |
| Os06g0699700 | ADCS | Os01g0867300 | bZIP transcription factor, Abiotic stress response, ABA signaling, Suppressor of floral transition upon drought stress | 0.90 | 0.01 | 3 | bZIP | Folate | OsABF1|OsABI5|OREB1|OsbZIP10 |
| Os07g0618500 | DHPS/HPPK | Os01g0867300 | bZIP transcription factor, Abiotic stress response, ABA signaling, Suppressor of floral transition upon drought stress | 0.78 | 0.06 | 3 | bZIP | Folate | OsABF1|OsABI5|OREB1|OsbZIP10 |
| Os08g0556200 | DHNA | Os01g0868000 | AP2/ERF transcription factor, Abiotic stress response, Salt stress response | 0.81 | 0.05 | 2 | ERF | Folate | OsEREBP2|ERF99 |
| Os05g0244700 | ADCL | Os01g0868000 | AP2/ERF transcription factor, Abiotic stress response, Salt stress response | 0.83 | 0.00 | 2 | ERF | Folate | OsEREBP2|ERF99 |
| Os12g0623800 | DHFS | Os01g0917400 | Zinc finger, CCCH-type domain containing protein.;Hypothetical conserved gene.;CCCH-type zinc finger protein, Resistance against bacterial blight disease | 0.72 | 0.11 | 4 | C3H | Folate | C3H12 |
| Os10g0503200 | FPGS | Os01g0917400 | Zinc finger, CCCH-type domain containing protein.;Hypothetical conserved gene.;CCCH-type zinc finger protein, Resistance against bacterial blight disease | 0.85 | 0.03 | 4 | C3H | Folate | C3H12 |
| Os06g0699700 | ADCS | Os01g0917400 | Zinc finger, CCCH-type domain containing protein.;Hypothetical conserved gene.;CCCH-type zinc finger protein, Resistance against bacterial blight disease | 0.81 | 0.05 | 4 | C3H | Folate | C3H12 |
| Os04g0662700 | GTPCHI | Os01g0917400 | Zinc finger, CCCH-type domain containing protein.;Hypothetical conserved gene.;CCCH-type zinc finger protein, Resistance against bacterial blight disease | 0.95 | 0.00 | 4 | C3H | Folate | C3H12 |
| Os10g0503200 | FPGS | Os01g0968800 | Similar to Dehydration responsive element binding protein 1F (DREB1F protein). | 0.73 | 0.10 | 2 | ERF | Folate | OsDREB1F|RCBF2 |
| Os09g0553300 | DHNP3 | Os01g0968800 | Similar to Dehydration responsive element binding protein 1F (DREB1F protein). | 0.75 | 0.09 | 2 | ERF | Folate | OsDREB1F|RCBF2 |
| Os06g0699700 | ADCS | Os02g0181300 | WRKY transcription factor, Defense response | 0.79 | 0.06 | 2 | WRKY | Folate | OsWRKY71 |
| Os02g0273100 | ADCL | Os02g0181300 | WRKY transcription factor, Defense response | 0.78 | 0.07 | 2 | WRKY | Folate | OsWRKY71 |
| Os06g0699700 | ADCS | Os02g0325600 | Nitrate-inducible and autorepressible transcriptional repressor, Nitrogen response;Similar to Phosphate starvation response regulator-like protein. | 0.86 | 0.03 | 2 | G2-like | Folate | NIGT1 |
| Os09g0553300 | DHNP3 | Os02g0325600 | Nitrate-inducible and autorepressible transcriptional repressor, Nitrogen response;Similar to Phosphate starvation response regulator-like protein. | 0.90 | 0.01 | 2 | G2-like | Folate | NIGT1 |
| Os11g0484400 | DHFR | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.09 | 0.00 | 2 | NF-YB | Folate | OsNF-YB1 |
| Os01g0238500 | ADCL | Os02g0725900 | Component of the NF-Y/HAP transcription factor complex, Regulation of endosperm development | 0.79 | 0.06 | 2 | NF-YB | Folate | OsNF-YB1 |
| Os02g0273100 | ADCL | Os02g0731200 | MADS-box transcription factor, Cold tolerance, Control of tillering | 0.81 | 0.05 | 2 | M-type_MADS | Folate | OsMADS57 |
| Os06g0699700 | ADCS | Os02g0731200 | MADS-box transcription factor, Cold tolerance, Control of tillering | 0.82 | 0.04 | 2 | M-type_MADS | Folate | OsMADS57 |
| Os11g0484400 | DHFR | Os02g0782700 | AP2/ERF transcription factor, Defense response, Abiotic stress response;Similar to Transcription factor EREBP1. | 0.84 | 0.03 | 3 | ERF | Folate | OsEREBP1 |
| Os04g0662700 | GTPCHI | Os02g0782700 | AP2/ERF transcription factor, Defense response, Abiotic stress response;Similar to Transcription factor EREBP1. | 0.97 | 0.00 | 3 | ERF | Folate | OsEREBP1 |
| Os07g0618500 | DHPS/HPPK | Os02g0782700 | AP2/ERF transcription factor, Defense response, Abiotic stress response;Similar to Transcription factor EREBP1. | 0.84 | 0.04 | 3 | ERF | Folate | OsEREBP1 |
| Os10g0503200 | FPGS | Os03g0318600 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.71 | 0.11 | 3 | bZIP | Folate | OsbZIP28|OsbZIP1 |
| Os09g0553300 | DHNP3 | Os03g0318600 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.98 | 0.00 | 3 | bZIP | Folate | OsbZIP28|OsbZIP1 |
| Os11g0484400 | DHFR | Os03g0318600 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.71 | 0.11 | 3 | bZIP | Folate | OsbZIP28|OsbZIP1 |
| Os07g0618500 | DHPS/HPPK | Os03g0324300 | Similar to cDNA clone:J033123C05, full insert sequence.;Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Similar to EIL3. | 0.79 | 0.06 | 3 | EIL | Folate | OsEIL1|MHZ6 |
| Os04g0662700 | GTPCHI | Os03g0324300 | Similar to cDNA clone:J033123C05, full insert sequence.;Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Similar to EIL3. | 0.92 | 0.01 | 3 | EIL | Folate | OsEIL1|MHZ6 |
| Os12g0623800 | DHFS | Os03g0324300 | Similar to cDNA clone:J033123C05, full insert sequence.;Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Similar to EIL3. | 0.81 | 0.05 | 3 | EIL | Folate | OsEIL1|MHZ6 |
| Os03g0111100 | FPGS | Os03g0639300 | Similar to Helix-loop-helix DNA-binding domain containing protein, expressed. | 0.79 | 0.06 | 2 | bHLH | Folate | OsPIL12 |
| Os10g0503200 | FPGS | Os03g0639300 | Similar to Helix-loop-helix DNA-binding domain containing protein, expressed. | 0.74 | 0.09 | 2 | bHLH | Folate | OsPIL12 |
| Os10g0503200 | FPGS | Os03g0771500 | Similar to Isoform 2 of Homeobox protein knotted-1-like 8. | 0.75 | 0.09 | 3 | TALE | Folate | OSH43 |
| Os06g0699700 | ADCS | Os03g0771500 | Similar to Isoform 2 of Homeobox protein knotted-1-like 8. | 0.73 | 0.10 | 3 | TALE | Folate | OSH43 |
| Os09g0553300 | DHNP3 | Os03g0771500 | Similar to Isoform 2 of Homeobox protein knotted-1-like 8. | 0.80 | 0.06 | 3 | TALE | Folate | OSH43 |
| Os06g0699700 | ADCS | Os03g0782500 | Phytochrome-interacting factor-like bHLH protein, Stress-responsive transcription factor, Regulator of reduced internode elongation under drought conditions | 0.78 | 0.00 | 2 | bHLH | Folate | OsPIL13|OsPIL1 |
| Os04g0662700 | GTPCHI | Os03g0782500 | Phytochrome-interacting factor-like bHLH protein, Stress-responsive transcription factor, Regulator of reduced internode elongation under drought conditions | 0.75 | 0.00 | 2 | bHLH | Folate | OsPIL13|OsPIL1 |
| Os10g0503200 | FPGS | Os03g0796900 | bZIP transcription factor, Globulin gene promoter in endosperm | 0.91 | 0.01 | 2 | bZIP | Folate | REB |
| Os09g0553300 | DHNP3 | Os03g0796900 | bZIP transcription factor, Globulin gene promoter in endosperm | 0.90 | 0.02 | 2 | bZIP | Folate | REB |
| Os07g0618500 | DHPS/HPPK | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.95 | 0.00 | 6 | SBP | Folate | SPL6 |
| Os11g0484400 | DHFR | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.97 | 0.00 | 6 | SBP | Folate | SPL6 |
| Os06g0699700 | ADCS | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.84 | 0.04 | 6 | SBP | Folate | SPL6 |
| Os02g0273100 | ADCL | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.73 | 0.10 | 6 | SBP | Folate | SPL6 |
| Os04g0662700 | GTPCHI | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.82 | 0.04 | 6 | SBP | Folate | SPL6 |
| Os09g0553300 | DHNP3 | Os03g0833300 | Similar to Squamosa-promoter binding-like protein 8.;Similar to Squamosa promoter-binding-like protein 6. | 0.88 | 0.02 | 6 | SBP | Folate | SPL6 |
| Os10g0503200 | FPGS | Os04g0194600 | Similar to PCF1. | 0.87 | 0.02 | 3 | TCP | Folate | PCF1 |
| Os12g0623800 | DHFS | Os04g0194600 | Similar to PCF1. | 0.93 | 0.01 | 3 | TCP | Folate | PCF1 |
| Os04g0662700 | GTPCHI | Os04g0194600 | Similar to PCF1. | 0.76 | 0.08 | 3 | TCP | Folate | PCF1 |
| Os04g0662700 | GTPCHI | Os04g0541100 | Similar to Gt-2. | 0.70 | 0.12 | 2 | Trihelix | Folate | GT-2 |
| Os11g0484400 | DHFR | Os04g0541100 | Similar to Gt-2. | 0.89 | 0.02 | 2 | Trihelix | Folate | GT-2 |
| Os03g0111100 | FPGS | Os04g0664400 | Similar to Auxin response factor 11.;Auxin response factor 1. | 0.85 | 0.03 | 2 | ARF | Folate | OsARF11 |
| Os08g0556200 | DHNA | Os04g0664400 | Similar to Auxin response factor 11.;Auxin response factor 1. | 0.81 | 0.05 | 2 | ARF | Folate | OsARF11 |
| Os09g0553300 | DHNP3 | Os05g0129700 | KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71). | 0.87 | 0.02 | 4 | TALE | Folate | OSH71|Oskn2 |
| Os07g0618500 | DHPS/HPPK | Os05g0129700 | KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71). | 0.86 | 0.03 | 4 | TALE | Folate | OSH71|Oskn2 |
| Os06g0699700 | ADCS | Os05g0129700 | KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71). | 0.91 | 0.01 | 4 | TALE | Folate | OSH71|Oskn2 |
| Os11g0484400 | DHFR | Os05g0129700 | KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71). | 0.90 | 0.01 | 4 | TALE | Folate | OSH71|Oskn2 |
| Os02g0273100 | ADCL | Os05g0203800 | Similar to MADS box protein.;Transcription factor, Floral organ development | 0.88 | 0.02 | 3 | MIKC_MADS | Folate | OSMADS58 |
| Os10g0503200 | FPGS | Os05g0203800 | Similar to MADS box protein.;Transcription factor, Floral organ development | 0.79 | 0.06 | 3 | MIKC_MADS | Folate | OSMADS58 |
| Os06g0699700 | ADCS | Os05g0203800 | Similar to MADS box protein.;Transcription factor, Floral organ development | 0.76 | 0.08 | 3 | MIKC_MADS | Folate | OSMADS58 |
| Os09g0553300 | DHNP3 | Os05g0346200 | Similar to Dehydration-responsive element-binding protein 2B. | 0.91 | 0.01 | 3 | ERF | Folate | OsDREB2B |
| Os04g0662700 | GTPCHI | Os05g0346200 | Similar to Dehydration-responsive element-binding protein 2B. | 0.89 | 0.02 | 3 | ERF | Folate | OsDREB2B |
| Os10g0503200 | FPGS | Os05g0346200 | Similar to Dehydration-responsive element-binding protein 2B. | 0.81 | 0.05 | 3 | ERF | Folate | OsDREB2B |
| Os11g0484400 | DHFR | Os05g0408200 | SBP domain containing protein. | 0.93 | 0.01 | 5 | SBP | Folate | OsSPL9 |
| Os02g0273100 | ADCL | Os05g0408200 | SBP domain containing protein. | 0.87 | 0.02 | 5 | SBP | Folate | OsSPL9 |
| Os07g0618500 | DHPS/HPPK | Os05g0408200 | SBP domain containing protein. | 0.90 | 0.02 | 5 | SBP | Folate | OsSPL9 |
| Os06g0699700 | ADCS | Os05g0408200 | SBP domain containing protein. | 0.91 | 0.01 | 5 | SBP | Folate | OsSPL9 |
| Os09g0553300 | DHNP3 | Os05g0408200 | SBP domain containing protein. | 0.89 | 0.02 | 5 | SBP | Folate | OsSPL9 |
| Os09g0553300 | DHNP3 | Os05g0411300 | Similar to DNA binding protein.;bZIP transcription factor, Regulation of endoplasmic reticulum stress response | 0.95 | 0.00 | 4 | bZIP | Folate | OsbZIP39 |
| Os06g0699700 | ADCS | Os05g0411300 | Similar to DNA binding protein.;bZIP transcription factor, Regulation of endoplasmic reticulum stress response | 0.88 | 0.02 | 4 | bZIP | Folate | OsbZIP39 |
| Os07g0618500 | DHPS/HPPK | Os05g0411300 | Similar to DNA binding protein.;bZIP transcription factor, Regulation of endoplasmic reticulum stress response | 0.92 | 0.01 | 4 | bZIP | Folate | OsbZIP39 |
| Os11g0484400 | DHFR | Os05g0411300 | Similar to DNA binding protein.;bZIP transcription factor, Regulation of endoplasmic reticulum stress response | 0.96 | 0.00 | 4 | bZIP | Folate | OsbZIP39 |
| Os11g0484400 | DHFR | Os05g0463800 | CCAAT-box binding transcription factor, Chloroplast biogenesis;Similar to Nuclear transcription factor Y subunit B-3. | 0.70 | 0.00 | 3 | NF-YB | Folate | OsHAP3B |
| Os09g0553300 | DHNP3 | Os05g0463800 | CCAAT-box binding transcription factor, Chloroplast biogenesis;Similar to Nuclear transcription factor Y subunit B-3. | 0.80 | 0.05 | 3 | NF-YB | Folate | OsHAP3B |
| Os06g0699700 | ADCS | Os05g0463800 | CCAAT-box binding transcription factor, Chloroplast biogenesis;Similar to Nuclear transcription factor Y subunit B-3. | 0.83 | 0.04 | 3 | NF-YB | Folate | OsHAP3B |
| Os04g0662700 | GTPCHI | Os05g0489700 | bZIP transcription factor, Modulation of the floral transition, Floral repressor | 0.94 | 0.01 | 5 | bZIP | Folate | HBF1 |
| Os10g0503200 | FPGS | Os05g0489700 | bZIP transcription factor, Modulation of the floral transition, Floral repressor | 0.85 | 0.03 | 5 | bZIP | Folate | HBF1 |
| Os09g0553300 | DHNP3 | Os05g0489700 | bZIP transcription factor, Modulation of the floral transition, Floral repressor | 0.73 | 0.10 | 5 | bZIP | Folate | HBF1 |
| Os12g0623800 | DHFS | Os05g0489700 | bZIP transcription factor, Modulation of the floral transition, Floral repressor | 0.87 | 0.02 | 5 | bZIP | Folate | HBF1 |
| Os07g0618500 | DHPS/HPPK | Os05g0489700 | bZIP transcription factor, Modulation of the floral transition, Floral repressor | 0.82 | 0.04 | 5 | bZIP | Folate | HBF1 |
| Os01g0238500 | ADCL | Os05g0573500 | CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.96 | 0.00 | 3 | NF-YB | Folate | OsHAP3C |
| Os11g0484400 | DHFR | Os05g0573500 | CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.09 | 0.00 | 3 | NF-YB | Folate | OsHAP3C |
| Os08g0556200 | DHNA | Os05g0573500 | CCAAT-box binding transcription factor, Chloroplast biogenesis | 0.80 | 0.06 | 3 | NF-YB | Folate | OsHAP3C |
| Os09g0553300 | DHNP3 | Os06g0162800 | MADS-box transcription factor, Control of spikelet morphogenesis, Regulation of floral meristem determinacy | 0.93 | 0.01 | 3 | MIKC_MADS | Folate | OsMADS5 |
| Os02g0273100 | ADCL | Os06g0162800 | MADS-box transcription factor, Control of spikelet morphogenesis, Regulation of floral meristem determinacy | 0.82 | 0.04 | 3 | MIKC_MADS | Folate | OsMADS5 |
| Os06g0699700 | ADCS | Os06g0162800 | MADS-box transcription factor, Control of spikelet morphogenesis, Regulation of floral meristem determinacy | 0.94 | 0.01 | 3 | MIKC_MADS | Folate | OsMADS5 |
| Os07g0618500 | DHPS/HPPK | Os06g0193400 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.88 | 0.02 | 4 | bHLH | Folate | OsPTF1 |
| Os10g0503200 | FPGS | Os06g0193400 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.72 | 0.10 | 4 | bHLH | Folate | OsPTF1 |
| Os12g0623800 | DHFS | Os06g0193400 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.85 | 0.03 | 4 | bHLH | Folate | OsPTF1 |
| Os04g0662700 | GTPCHI | Os06g0193400 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.70 | 0.12 | 4 | bHLH | Folate | OsPTF1 |
| Os12g0623800 | DHFS | Os06g0211200 | bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance;Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). | 0.85 | 0.03 | 4 | bZIP | Folate | OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1 |
| Os10g0503200 | FPGS | Os06g0211200 | bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance;Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). | 0.92 | 0.01 | 4 | bZIP | Folate | OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1 |
| Os12g0446900 | DHFR | Os06g0211200 | bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance;Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). | 0.73 | 0.00 | 4 | bZIP | Folate | OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1 |
| Os04g0662700 | GTPCHI | Os06g0211200 | bZIP transcription factor, Positive regulator of ABA signaling, Drought tolerance;Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1). | 0.77 | 0.07 | 4 | bZIP | Folate | OsAREB8|OsAREB1|OsbZIP46|OsABF2|ABL1 |
| Os11g0484400 | DHFR | Os06g0229300 | Similar to Hox2b protein. | 0.86 | 0.03 | 2 | HB-PHD | Folate | HAZ1|HOX1a |
| Os12g0446900 | DHFR | Os06g0229300 | Similar to Hox2b protein. | 0.77 | 0.07 | 2 | HB-PHD | Folate | HAZ1|HOX1a |
| Os12g0623800 | DHFS | Os06g0702600 | Auxin response factor 19, Control of leaf angle | 0.81 | 0.05 | 2 | ARF | Folate | OsARF19 |
| Os11g0484400 | DHFR | Os06g0702600 | Auxin response factor 19, Control of leaf angle | 0.89 | 0.02 | 2 | ARF | Folate | OsARF19 |
| Os06g0699700 | ADCS | Os07g0143200 | Cold-induced alternative splicing variant of OsPIF14;Phytochrome-interacting bHLH factor, Cross-talk between light and stress signaling | 0.86 | 0.03 | 2 | bHLH | Folate | OsPIL14|OsPIF14 |
| Os09g0553300 | DHNP3 | Os07g0143200 | Cold-induced alternative splicing variant of OsPIF14;Phytochrome-interacting bHLH factor, Cross-talk between light and stress signaling | 0.74 | 0.09 | 2 | bHLH | Folate | OsPIL14|OsPIF14 |
| Os07g0618500 | DHPS/HPPK | Os07g0152000 | Transcription factor , Cold tolerance | 0.96 | 0.00 | 5 | TCP | Folate | OsTCP21 |
| Os12g0446900 | DHFR | Os07g0152000 | Transcription factor , Cold tolerance | 0.95 | 0.00 | 5 | TCP | Folate | OsTCP21 |
| Os04g0662700 | GTPCHI | Os07g0152000 | Transcription factor , Cold tolerance | 0.85 | 0.03 | 5 | TCP | Folate | OsTCP21 |
| Os11g0484400 | DHFR | Os07g0152000 | Transcription factor , Cold tolerance | 0.97 | 0.00 | 5 | TCP | Folate | OsTCP21 |
| Os06g0699700 | ADCS | Os07g0152000 | Transcription factor , Cold tolerance | 0.84 | 0.04 | 5 | TCP | Folate | OsTCP21 |
| Os11g0484400 | DHFR | Os07g0583700 | WRKY transcription factor 78. | 0.90 | 0.01 | 2 | WRKY | Folate | OsWRKY78 |
| Os06g0699700 | ADCS | Os07g0583700 | WRKY transcription factor 78. | 0.88 | 0.02 | 2 | WRKY | Folate | OsWRKY78 |
| Os02g0273100 | ADCL | Os07g0685700 | Transcription factor, Response to ethylene stimulus, Wound signaling | 0.78 | 0.06 | 4 | EIL | Folate | OsEIL2 |
| Os10g0503200 | FPGS | Os07g0685700 | Transcription factor, Response to ethylene stimulus, Wound signaling | 0.71 | 0.11 | 4 | EIL | Folate | OsEIL2 |
| Os06g0699700 | ADCS | Os07g0685700 | Transcription factor, Response to ethylene stimulus, Wound signaling | 0.91 | 0.01 | 4 | EIL | Folate | OsEIL2 |
| Os04g0662700 | GTPCHI | Os07g0685700 | Transcription factor, Response to ethylene stimulus, Wound signaling | 0.78 | 0.07 | 4 | EIL | Folate | OsEIL2 |
| Os09g0553300 | DHNP3 | Os07g0687700 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.98 | 0.00 | 2 | bZIP | Folate | rTGA2.1|OsbZIP63|OsNIF1 |
| Os11g0484400 | DHFR | Os07g0687700 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.79 | 0.06 | 2 | bZIP | Folate | rTGA2.1|OsbZIP63|OsNIF1 |
| Os04g0662700 | GTPCHI | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.89 | 0.02 | 9 | B3 | Folate | IDEF1 |
| Os07g0618500 | DHPS/HPPK | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.90 | 0.02 | 9 | B3 | Folate | IDEF1 |
| Os10g0503200 | FPGS | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.83 | 0.04 | 9 | B3 | Folate | IDEF1 |
| Os09g0553300 | DHNP3 | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.92 | 0.01 | 9 | B3 | Folate | IDEF1 |
| Os11g0484400 | DHFR | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.93 | 0.01 | 9 | B3 | Folate | IDEF1 |
| Os02g0273100 | ADCL | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.79 | 0.06 | 9 | B3 | Folate | IDEF1 |
| Os06g0699700 | ADCS | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.85 | 0.03 | 9 | B3 | Folate | IDEF1 |
| Os12g0446900 | DHFR | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.73 | 0.00 | 9 | B3 | Folate | IDEF1 |
| Os12g0623800 | DHFS | Os08g0101000 | ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance | 0.76 | 0.08 | 9 | B3 | Folate | IDEF1 |
| Os06g0699700 | ADCS | Os08g0157600 | MYB transcription factor, Circadian clock;Similar to LHY protein. | 0.77 | 0.00 | 2 | MYB_related | Folate | OsLHY |
| Os10g0503200 | FPGS | Os08g0157600 | MYB transcription factor, Circadian clock;Similar to LHY protein. | 0.71 | 0.00 | 2 | MYB_related | Folate | OsLHY |
| Os04g0662700 | GTPCHI | Os08g0157900 | Similar to NAM protein. | 0.78 | 0.07 | 2 | NAC | Folate | OsNTL2 |
| Os11g0484400 | DHFR | Os08g0157900 | Similar to NAM protein. | 0.96 | 0.00 | 2 | NAC | Folate | OsNTL2 |
| Os12g0446900 | DHFR | Os08g0292000 | Hypothetical conserved gene.;Homeobox domain containing protein. | 0.77 | 0.07 | 2 | HD-ZIP | Folate | OsTF1L |
| Os11g0484400 | DHFR | Os08g0292000 | Hypothetical conserved gene.;Homeobox domain containing protein. | 0.72 | 0.10 | 2 | HD-ZIP | Folate | OsTF1L |
| Os11g0484400 | DHFR | Os08g0499300 | WRKY transcription factor 30.;Similar to WRKY transcription factor 42 (Fragment). | 0.91 | 0.01 | 2 | WRKY | Folate | OsWRKY30 |
| Os06g0699700 | ADCS | Os08g0499300 | WRKY transcription factor 30.;Similar to WRKY transcription factor 42 (Fragment). | 0.92 | 0.01 | 2 | WRKY | Folate | OsWRKY30 |
| Os11g0484400 | DHFR | Os08g0506700 | Helix-loop-helix DNA-binding domain containing protein. | 0.95 | 0.00 | 3 | bHLH | Folate | OsFBH1 |
| Os04g0662700 | GTPCHI | Os08g0506700 | Helix-loop-helix DNA-binding domain containing protein. | 0.77 | 0.07 | 3 | bHLH | Folate | OsFBH1 |
| Os06g0699700 | ADCS | Os08g0506700 | Helix-loop-helix DNA-binding domain containing protein. | 0.91 | 0.01 | 3 | bHLH | Folate | OsFBH1 |
| Os11g0484400 | DHFR | Os08g0509600 | Squamosa promter-binding-like transcription activator, Regulation of branching in panicles and vegetative shoots, Semidominant regulator of plant architecture | 0.95 | 0.00 | 3 | SBP | Folate | OsSPL14|IPA1|WFP |
| Os04g0662700 | GTPCHI | Os08g0509600 | Squamosa promter-binding-like transcription activator, Regulation of branching in panicles and vegetative shoots, Semidominant regulator of plant architecture | 0.83 | 0.04 | 3 | SBP | Folate | OsSPL14|IPA1|WFP |
| Os07g0618500 | DHPS/HPPK | Os08g0509600 | Squamosa promter-binding-like transcription activator, Regulation of branching in panicles and vegetative shoots, Semidominant regulator of plant architecture | 0.98 | 0.00 | 3 | SBP | Folate | OsSPL14|IPA1|WFP |
| Os10g0503200 | FPGS | Os09g0299200 | MYB-type transcription factor, Reguration of high-affinity potassium transporter, Salt tolerance | 0.71 | 0.11 | 3 | G2-like | Folate | OsROC1|OsMYBc |
| Os06g0699700 | ADCS | Os09g0299200 | MYB-type transcription factor, Reguration of high-affinity potassium transporter, Salt tolerance | 0.97 | 0.00 | 3 | G2-like | Folate | OsROC1|OsMYBc |
| Os11g0484400 | DHFR | Os09g0299200 | MYB-type transcription factor, Reguration of high-affinity potassium transporter, Salt tolerance | 0.72 | 0.10 | 3 | G2-like | Folate | OsROC1|OsMYBc |
| Os02g0273100 | ADCL | Os09g0395300 | GARP DNA-binding protien, Leaf polarity modeling | 0.88 | 0.02 | 3 | G2-like | Folate | RL9|SLL1 |
| Os09g0553300 | DHNP3 | Os09g0395300 | GARP DNA-binding protien, Leaf polarity modeling | 0.76 | 0.08 | 3 | G2-like | Folate | RL9|SLL1 |
| Os06g0699700 | ADCS | Os09g0395300 | GARP DNA-binding protien, Leaf polarity modeling | 0.88 | 0.02 | 3 | G2-like | Folate | RL9|SLL1 |
| Os07g0618500 | DHPS/HPPK | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.71 | 0.11 | 6 | bZIP | Folate | OsbZIP72 |
| Os10g0503200 | FPGS | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.83 | 0.00 | 6 | bZIP | Folate | OsbZIP72 |
| Os02g0273100 | ADCL | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.76 | 0.08 | 6 | bZIP | Folate | OsbZIP72 |
| Os09g0553300 | DHNP3 | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.76 | 0.08 | 6 | bZIP | Folate | OsbZIP72 |
| Os11g0484400 | DHFR | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.75 | 0.09 | 6 | bZIP | Folate | OsbZIP72 |
| Os06g0699700 | ADCS | Os09g0456200 | Similar to BZIP transcription factor ABI5. | 0.83 | 0.04 | 6 | bZIP | Folate | OsbZIP72 |
| Os11g0484400 | DHFR | Os09g0470500 | Homeodomain leucine zipper protein. | 0.88 | 0.02 | 2 | HD-ZIP | Folate | Oshox4 |
| Os07g0618500 | DHPS/HPPK | Os09g0470500 | Homeodomain leucine zipper protein. | 0.90 | 0.01 | 2 | HD-ZIP | Folate | Oshox4 |
| Os09g0553300 | DHNP3 | Os09g0474000 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.79 | 0.06 | 2 | bZIP | Folate | OsTFX1 |
| Os06g0699700 | ADCS | Os09g0474000 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.81 | 0.05 | 2 | bZIP | Folate | OsTFX1 |
| Os04g0662700 | GTPCHI | Os09g0481700 | SUSIBA2-like (WRKY transcription factor 80). | 0.86 | 0.03 | 2 | WRKY | Folate | OsWRKY80 |
| Os06g0699700 | ADCS | Os09g0481700 | SUSIBA2-like (WRKY transcription factor 80). | 0.76 | 0.08 | 2 | WRKY | Folate | OsWRKY80 |
| Os10g0503200 | FPGS | Os09g0489500 | bZIP transcription factor, Tapetum development;Similar to DNA binding protein. | 0.87 | 0.03 | 2 | bZIP | Folate | OsTGA10 |
| Os09g0553300 | DHNP3 | Os09g0489500 | bZIP transcription factor, Tapetum development;Similar to DNA binding protein. | 0.93 | 0.01 | 2 | bZIP | Folate | OsTGA10 |
| Os02g0273100 | ADCL | Os09g0510500 | Basic helix-loop-helix (bHLH) transcriptional activator, Control of leaf angle and grain size | 0.70 | 0.12 | 3 | bHLH | Folate | OsBC1 |
| Os09g0553300 | DHNP3 | Os09g0510500 | Basic helix-loop-helix (bHLH) transcriptional activator, Control of leaf angle and grain size | 0.83 | 0.04 | 3 | bHLH | Folate | OsBC1 |
| Os06g0699700 | ADCS | Os09g0510500 | Basic helix-loop-helix (bHLH) transcriptional activator, Control of leaf angle and grain size | 0.86 | 0.03 | 3 | bHLH | Folate | OsBC1 |
| Os06g0699700 | ADCS | Os10g0480200 | Similar to Rolled leaf1.;Similar to Homeobox-leucine zipper protein HOX9. | 0.80 | 0.06 | 2 | HD-ZIP | Folate | OSHB2 |
| Os09g0553300 | DHNP3 | Os10g0480200 | Similar to Rolled leaf1.;Similar to Homeobox-leucine zipper protein HOX9. | 0.76 | 0.08 | 2 | HD-ZIP | Folate | OSHB2 |
| Os07g0618500 | DHPS/HPPK | Os10g0575000 | JAZ-interacting transcription factor, Positive regulator of jasmonate (JA) signaling pathway, Bacterial blight resistance, Spikelet development | 0.71 | 0.11 | 3 | bHLH | Folate | OsMYC2 |
| Os04g0662700 | GTPCHI | Os10g0575000 | JAZ-interacting transcription factor, Positive regulator of jasmonate (JA) signaling pathway, Bacterial blight resistance, Spikelet development | 0.88 | 0.02 | 3 | bHLH | Folate | OsMYC2 |
| Os06g0699700 | ADCS | Os10g0575000 | JAZ-interacting transcription factor, Positive regulator of jasmonate (JA) signaling pathway, Bacterial blight resistance, Spikelet development | 0.73 | 0.10 | 3 | bHLH | Folate | OsMYC2 |
| Os11g0484400 | DHFR | Os11g0175700 | Similar to Transcription factor PCF3. | 0.89 | 0.02 | 8 | TCP | Folate | PCF3 |
| Os07g0618500 | DHPS/HPPK | Os11g0175700 | Similar to Transcription factor PCF3. | 0.86 | 0.03 | 8 | TCP | Folate | PCF3 |
| Os06g0699700 | ADCS | Os11g0175700 | Similar to Transcription factor PCF3. | 0.79 | 0.06 | 8 | TCP | Folate | PCF3 |
| Os10g0503200 | FPGS | Os11g0175700 | Similar to Transcription factor PCF3. | 0.78 | 0.07 | 8 | TCP | Folate | PCF3 |
| Os04g0662700 | GTPCHI | Os11g0175700 | Similar to Transcription factor PCF3. | 0.76 | 0.08 | 8 | TCP | Folate | PCF3 |
| Os09g0553300 | DHNP3 | Os11g0175700 | Similar to Transcription factor PCF3. | 0.81 | 0.05 | 8 | TCP | Folate | PCF3 |
| Os02g0273100 | ADCL | Os11g0175700 | Similar to Transcription factor PCF3. | 0.84 | 0.04 | 8 | TCP | Folate | PCF3 |
| Os03g0111100 | FPGS | Os11g0175700 | Similar to Transcription factor PCF3. | 0.71 | 0.12 | 8 | TCP | Folate | PCF3 |
| Os06g0699700 | ADCS | Os12g0123700 | NAC domain containing transcription factor, Abiotic and biotic stress response | 0.76 | 0.08 | 2 | NAC | Folate | ONAC131 |
| Os10g0503200 | FPGS | Os12g0123700 | NAC domain containing transcription factor, Abiotic and biotic stress response | 0.75 | 0.09 | 2 | NAC | Folate | ONAC131 |
| Os09g0553300 | DHNP3 | Os12g0233800 | Similar to DNA-binding factor of bZIP class. | 0.93 | 0.01 | 3 | bZIP | Folate | OsZIP-1a|OsbZIP86 |
| Os10g0503200 | FPGS | Os12g0233800 | Similar to DNA-binding factor of bZIP class. | 0.80 | 0.05 | 3 | bZIP | Folate | OsZIP-1a|OsbZIP86 |
| Os06g0699700 | ADCS | Os12g0233800 | Similar to DNA-binding factor of bZIP class. | 0.92 | 0.01 | 3 | bZIP | Folate | OsZIP-1a|OsbZIP86 |
| Os10g0503200 | FPGS | Os12g0610200 | Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). | 0.76 | 0.08 | 2 | bHLH | Folate | OsPIL11 |
| Os04g0662700 | GTPCHI | Os12g0610200 | Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008). | 0.85 | 0.03 | 2 | bHLH | Folate | OsPIL11 |
| Os11g0484400 | DHFR | Os01g0187900 | Similar to Transcription factor MYBS2. | 0.99 | 0.00 | 2 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os01g0187900 | Similar to Transcription factor MYBS2. | 0.76 | 0.08 | 2 | MYB_related | Folate | NA |
| Os12g0446900 | DHFR | Os01g0224100 | Similar to DNA binding protein-like protein. | 0.89 | 0.00 | 2 | ERF | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0224100 | Similar to DNA binding protein-like protein. | 0.77 | 0.07 | 2 | ERF | Folate | NA |
| Os06g0699700 | ADCS | Os01g0246700 | Similar to WRKY transcription factor 1. | 0.72 | 0.11 | 2 | WRKY | Folate | NA |
| Os02g0273100 | ADCL | Os01g0246700 | Similar to WRKY transcription factor 1. | 0.73 | 0.10 | 2 | WRKY | Folate | NA |
| Os11g0484400 | DHFR | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.95 | 0.00 | 6 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.94 | 0.01 | 6 | SBP | Folate | NA |
| Os06g0699700 | ADCS | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.93 | 0.01 | 6 | SBP | Folate | NA |
| Os04g0662700 | GTPCHI | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.76 | 0.08 | 6 | SBP | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.90 | 0.01 | 6 | SBP | Folate | NA |
| Os02g0273100 | ADCL | Os01g0292900 | Similar to Squamosa-promoter binding-like protein 2. | 0.86 | 0.03 | 6 | SBP | Folate | NA |
| Os12g0623800 | DHFS | Os01g0572100 | Zinc finger, CCCH-type domain containing protein. | 0.72 | 0.11 | 2 | C3H | Folate | NA |
| Os11g0484400 | DHFR | Os01g0572100 | Zinc finger, CCCH-type domain containing protein. | 0.95 | 0.00 | 2 | C3H | Folate | NA |
| Os10g0503200 | FPGS | Os01g0678700 | DP protein. | 0.88 | 0.02 | 2 | E2F/DP | Folate | NA |
| Os11g0484400 | DHFR | Os01g0678700 | DP protein. | 0.81 | 0.00 | 2 | E2F/DP | Folate | NA |
| Os11g0484400 | DHFR | Os01g0761100 | Tesmin/TSO1-like, CXC domain containing protein. | 0.96 | 0.00 | 4 | CPP | Folate | NA |
| Os06g0699700 | ADCS | Os01g0761100 | Tesmin/TSO1-like, CXC domain containing protein. | 0.83 | 0.04 | 4 | CPP | Folate | NA |
| Os02g0273100 | ADCL | Os01g0761100 | Tesmin/TSO1-like, CXC domain containing protein. | 0.83 | 0.04 | 4 | CPP | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0761100 | Tesmin/TSO1-like, CXC domain containing protein. | 0.81 | 0.05 | 4 | CPP | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0808100 | Similar to BZIP transcription factor. | 0.75 | 0.08 | 4 | bZIP | Folate | NA |
| Os11g0484400 | DHFR | Os01g0808100 | Similar to BZIP transcription factor. | 0.97 | 0.00 | 4 | bZIP | Folate | NA |
| Os12g0623800 | DHFS | Os01g0808100 | Similar to BZIP transcription factor. | 0.73 | 0.10 | 4 | bZIP | Folate | NA |
| Os04g0662700 | GTPCHI | Os01g0808100 | Similar to BZIP transcription factor. | 0.82 | 0.05 | 4 | bZIP | Folate | NA |
| Os05g0244700 | ADCL | Os01g0838600 | Zinc finger, C2H2-like domain containing protein. | 0.87 | 0.02 | 2 | C2H2 | Folate | NA |
| Os08g0556200 | DHNA | Os01g0838600 | Zinc finger, C2H2-like domain containing protein. | 0.76 | 0.08 | 2 | C2H2 | Folate | NA |
| Os05g0517500 | GGH | Os01g0915600 | Similar to TA1 protein (Fragment). | 0.73 | 0.10 | 5 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os01g0915600 | Similar to TA1 protein (Fragment). | 0.75 | 0.09 | 5 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os01g0915600 | Similar to TA1 protein (Fragment). | 0.71 | 0.11 | 5 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os01g0915600 | Similar to TA1 protein (Fragment). | 0.95 | 0.00 | 5 | bHLH | Folate | NA |
| Os10g0503200 | FPGS | Os01g0915600 | Similar to TA1 protein (Fragment). | 0.73 | 0.10 | 5 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os01g0922600 | Similar to SBP-domain protein 4. | 0.90 | 0.02 | 3 | SBP | Folate | NA |
| Os02g0273100 | ADCL | Os01g0922600 | Similar to SBP-domain protein 4. | 0.77 | 0.07 | 3 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0922600 | Similar to SBP-domain protein 4. | 0.85 | 0.03 | 3 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os01g0924400 | Similar to Auxin-induced basic helix-loop-helix transcription factor. | 0.81 | 0.05 | 2 | TCP | Folate | NA |
| Os04g0662700 | GTPCHI | Os01g0924400 | Similar to Auxin-induced basic helix-loop-helix transcription factor. | 0.79 | 0.06 | 2 | TCP | Folate | NA |
| Os10g0503200 | FPGS | Os02g0141100 | Similar to Auxin response factor 5. | 0.76 | 0.08 | 3 | ARF | Folate | NA |
| Os12g0623800 | DHFS | Os02g0141100 | Similar to Auxin response factor 5. | 0.73 | 0.10 | 3 | ARF | Folate | NA |
| Os11g0484400 | DHFR | Os02g0141100 | Similar to Auxin response factor 5. | 0.97 | 0.00 | 3 | ARF | Folate | NA |
| Os04g0662700 | GTPCHI | Os02g0148500 | Similar to TIMING OF CAB 1 (Fragment). | 0.85 | 0.03 | 2 | GATA | Folate | NA |
| Os11g0484400 | DHFR | Os02g0148500 | Similar to TIMING OF CAB 1 (Fragment). | 0.98 | 0.00 | 2 | GATA | Folate | NA |
| Os06g0699700 | ADCS | Os02g0174100 | Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;SBP domain containing protein. | 0.90 | 0.01 | 3 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os02g0174100 | Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;SBP domain containing protein. | 0.82 | 0.05 | 3 | SBP | Folate | NA |
| Os02g0273100 | ADCL | Os02g0174100 | Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;SBP domain containing protein. | 0.89 | 0.02 | 3 | SBP | Folate | NA |
| Os03g0111100 | FPGS | Os02g0182800 | Similar to NTH23 protein. | 0.77 | 0.07 | 5 | TALE | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os02g0182800 | Similar to NTH23 protein. | 0.77 | 0.08 | 5 | TALE | Folate | NA |
| Os06g0699700 | ADCS | Os02g0182800 | Similar to NTH23 protein. | 0.85 | 0.03 | 5 | TALE | Folate | NA |
| Os12g0623800 | DHFS | Os02g0182800 | Similar to NTH23 protein. | 0.74 | 0.09 | 5 | TALE | Folate | NA |
| Os09g0553300 | DHNP3 | Os02g0182800 | Similar to NTH23 protein. | 0.87 | 0.02 | 5 | TALE | Folate | NA |
| Os06g0699700 | ADCS | Os02g0499000 | Similar to DNA binding protein. | 0.95 | 0.00 | 2 | ERF | Folate | NA |
| Os10g0503200 | FPGS | Os02g0499000 | Similar to DNA binding protein. | 0.79 | 0.00 | 2 | ERF | Folate | NA |
| Os11g0484400 | DHFR | Os02g0542200 | Similar to H0525E10.9 protein. | 0.73 | 0.10 | 2 | FAR1 | Folate | NA |
| Os12g0446900 | DHFR | Os02g0542200 | Similar to H0525E10.9 protein. | 0.79 | 0.06 | 2 | FAR1 | Folate | NA |
| Os02g0273100 | ADCL | Os02g0565600 | Similar to Homeodomain leucine zipper protein (Fragment). | 0.90 | 0.02 | 2 | HD-ZIP | Folate | NA |
| Os06g0699700 | ADCS | Os02g0565600 | Similar to Homeodomain leucine zipper protein (Fragment). | 0.85 | 0.03 | 2 | HD-ZIP | Folate | NA |
| Os03g0111100 | FPGS | Os02g0603600 | Conserved hypothetical protein. | 0.73 | 0.00 | 2 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os02g0603600 | Conserved hypothetical protein. | 0.84 | 0.04 | 2 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os02g0614300 | Similar to ANT-like protein. | 0.70 | 0.12 | 2 | AP2 | Folate | NA |
| Os11g0484400 | DHFR | Os02g0614300 | Similar to ANT-like protein. | 0.86 | 0.03 | 2 | AP2 | Folate | NA |
| Os06g0699700 | ADCS | Os02g0680700 | Similar to DNA binding protein. | 0.87 | 0.03 | 4 | MYB_related | Folate | NA |
| Os10g0503200 | FPGS | Os02g0680700 | Similar to DNA binding protein. | 0.84 | 0.04 | 4 | MYB_related | Folate | NA |
| Os04g0662700 | GTPCHI | Os02g0680700 | Similar to DNA binding protein. | 0.83 | 0.04 | 4 | MYB_related | Folate | NA |
| Os09g0553300 | DHNP3 | Os02g0680700 | Similar to DNA binding protein. | 0.93 | 0.01 | 4 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.89 | 0.02 | 6 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.90 | 0.01 | 6 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.84 | 0.04 | 6 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.89 | 0.02 | 6 | bHLH | Folate | NA |
| Os10g0503200 | FPGS | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.83 | 0.04 | 6 | bHLH | Folate | NA |
| Os02g0273100 | ADCL | Os02g0705500 | Helix-loop-helix DNA-binding domain containing protein. | 0.80 | 0.06 | 6 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os02g0796500 | B-type response regulator, Cytokinin signaling | 0.87 | 0.02 | 2 | ARR-B | Folate | NA |
| Os06g0699700 | ADCS | Os02g0796500 | B-type response regulator, Cytokinin signaling | 0.85 | 0.03 | 2 | ARR-B | Folate | NA |
| Os06g0699700 | ADCS | Os03g0127500 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.70 | 0.12 | 2 | bZIP | Folate | NA |
| Os10g0503200 | FPGS | Os03g0127500 | bZIP transcription factor, bZIP-1 domain containing protein. | 0.79 | 0.06 | 2 | bZIP | Folate | NA |
| Os06g0699700 | ADCS | Os03g0131100 | Octicosapeptide/Phox/Bem1p domain containing protein. | 0.91 | 0.01 | 2 | Nin-like | Folate | NA |
| Os11g0484400 | DHFR | Os03g0131100 | Octicosapeptide/Phox/Bem1p domain containing protein. | 0.86 | 0.03 | 2 | Nin-like | Folate | NA |
| Os10g0503200 | FPGS | Os03g0170600 | Similar to Homeobox-leucine zipper protein HOX21. | 0.77 | 0.07 | 2 | HD-ZIP | Folate | NA |
| Os06g0699700 | ADCS | Os03g0170600 | Similar to Homeobox-leucine zipper protein HOX21. | 0.94 | 0.01 | 2 | HD-ZIP | Folate | NA |
| Os12g0623800 | DHFS | Os03g0174400 | Hypothetical conserved gene. | 0.92 | 0.01 | 2 | ERF | Folate | NA |
| Os10g0503200 | FPGS | Os03g0174400 | Hypothetical conserved gene. | 0.82 | 0.04 | 2 | ERF | Folate | NA |
| Os11g0484400 | DHFR | Os03g0181600 | Similar to cDNA clone:J033068D01, full insert sequence.;Similar to GATA transcription factor 25 (ZIM-like 2 protein). | 0.86 | 0.03 | 3 | FAR1 | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os03g0181600 | Similar to cDNA clone:J033068D01, full insert sequence.;Similar to GATA transcription factor 25 (ZIM-like 2 protein). | 0.89 | 0.02 | 3 | FAR1 | Folate | NA |
| Os12g0623800 | DHFS | Os03g0181600 | Similar to cDNA clone:J033068D01, full insert sequence.;Similar to GATA transcription factor 25 (ZIM-like 2 protein). | 0.80 | 0.06 | 3 | FAR1 | Folate | NA |
| Os11g0484400 | DHFR | Os03g0184500 | Transcriptional factor B3 family protein. | 0.70 | 0.12 | 2 | B3 | Folate | NA |
| Os12g0446900 | DHFR | Os03g0184500 | Transcriptional factor B3 family protein. | 0.86 | 0.03 | 2 | B3 | Folate | NA |
| Os06g0699700 | ADCS | Os03g0224200 | Similar to response regulator 8.;B-type response regulator, Cytokinin signaling | 0.87 | 0.03 | 3 | ARR-B | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os03g0224200 | Similar to response regulator 8.;B-type response regulator, Cytokinin signaling | 0.94 | 0.01 | 3 | ARR-B | Folate | NA |
| Os11g0484400 | DHFR | Os03g0224200 | Similar to response regulator 8.;B-type response regulator, Cytokinin signaling | 0.96 | 0.00 | 3 | ARR-B | Folate | NA |
| Os02g0273100 | ADCL | Os03g0335200 | Similar to WRKY1 (WRKY transcription factor 17). | 0.84 | 0.03 | 2 | WRKY | Folate | NA |
| Os06g0699700 | ADCS | Os03g0335200 | Similar to WRKY1 (WRKY transcription factor 17). | 0.91 | 0.01 | 2 | WRKY | Folate | NA |
| Os12g0623800 | DHFS | Os03g0655600 | Hypothetical conserved gene.;MULE transposase, conserved domain domain containing protein. | 0.77 | 0.07 | 2 | FAR1 | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os03g0655600 | Hypothetical conserved gene.;MULE transposase, conserved domain domain containing protein. | 0.96 | 0.00 | 2 | FAR1 | Folate | NA |
| Os06g0699700 | ADCS | Os03g0684000 | Similar to GATA transcription factor 1 (AtGATA-1). | 0.90 | 0.01 | 2 | GATA | Folate | NA |
| Os02g0273100 | ADCL | Os03g0684000 | Similar to GATA transcription factor 1 (AtGATA-1). | 0.94 | 0.01 | 2 | GATA | Folate | NA |
| Os11g0484400 | DHFR | Os03g0718200 | Zinc finger, SWIM-type domain containing protein. | 0.83 | 0.04 | 2 | FAR1 | Folate | NA |
| Os12g0623800 | DHFS | Os03g0718200 | Zinc finger, SWIM-type domain containing protein. | 0.88 | 0.02 | 2 | FAR1 | Folate | NA |
| Os04g0662700 | GTPCHI | Os03g0741400 | Similar to SUSIBA2. | 0.98 | 0.00 | 3 | WRKY | Folate | NA |
| Os06g0699700 | ADCS | Os03g0741400 | Similar to SUSIBA2. | 0.70 | 0.12 | 3 | WRKY | Folate | NA |
| Os11g0484400 | DHFR | Os03g0741400 | Similar to SUSIBA2. | 0.88 | 0.02 | 3 | WRKY | Folate | NA |
| Os06g0699700 | ADCS | Os03g0797600 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.98 | 0.00 | 3 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os03g0797600 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.75 | 0.08 | 3 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os03g0797600 | Similar to BHLH transcription factor.;Similar to Helix-loop-helix protein homolog. | 0.76 | 0.08 | 3 | bHLH | Folate | NA |
| Os12g0446900 | DHFR | Os03g0802900 | Similar to MYC1. | 0.90 | 0.00 | 2 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os03g0802900 | Similar to MYC1. | 0.75 | 0.09 | 2 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os03g0843700 | FAR1 domain containing protein. | 0.76 | 0.08 | 2 | FAR1 | Folate | NA |
| Os12g0623800 | DHFS | Os03g0843700 | FAR1 domain containing protein. | 0.75 | 0.09 | 2 | FAR1 | Folate | NA |
| Os02g0273100 | ADCL | Os03g0855100 | Similar to WRKY transcription factor 12. | 0.77 | 0.07 | 3 | WRKY | Folate | NA |
| Os09g0553300 | DHNP3 | Os03g0855100 | Similar to WRKY transcription factor 12. | 0.80 | 0.06 | 3 | WRKY | Folate | NA |
| Os06g0699700 | ADCS | Os03g0855100 | Similar to WRKY transcription factor 12. | 0.86 | 0.03 | 3 | WRKY | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os04g0105000 | Zinc finger, CCCH-type domain containing protein. | 0.86 | 0.03 | 2 | C3H | Folate | NA |
| Os11g0484400 | DHFR | Os04g0105000 | Zinc finger, CCCH-type domain containing protein. | 0.86 | 0.03 | 2 | C3H | Folate | NA |
| Os11g0484400 | DHFR | Os04g0117600 | Similar to H0613H07.1 protein. | 0.76 | 0.08 | 2 | C3H | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os04g0117600 | Similar to H0613H07.1 protein. | 0.82 | 0.05 | 2 | C3H | Folate | NA |
| Os06g0699700 | ADCS | Os04g0416100 | Similar to Transcription factor E2F1 (E2F-1) (Fragment). | 0.94 | 0.00 | 2 | E2F/DP | Folate | NA |
| Os09g0553300 | DHNP3 | Os04g0416100 | Similar to Transcription factor E2F1 (E2F-1) (Fragment). | 0.85 | 0.03 | 2 | E2F/DP | Folate | NA |
| Os05g0244700 | ADCL | Os04g0547600 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.71 | 0.11 | 2 | ERF | Folate | NA |
| Os08g0556200 | DHNA | Os04g0547600 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.87 | 0.02 | 2 | ERF | Folate | NA |
| Os12g0623800 | DHFS | Os04g0618600 | Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). | 0.99 | 0.00 | 5 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os04g0618600 | Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). | 0.71 | 0.11 | 5 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os04g0618600 | Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). | 0.72 | 0.11 | 5 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os04g0618600 | Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). | 0.71 | 0.11 | 5 | bHLH | Folate | NA |
| Os03g0111100 | FPGS | Os04g0618600 | Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light). | 0.79 | 0.06 | 5 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os04g0627000 | Similar to Homeobox-leucine zipper protein ROC2. | 0.76 | 0.08 | 2 | HD-ZIP | Folate | NA |
| Os09g0553300 | DHNP3 | Os04g0627000 | Similar to Homeobox-leucine zipper protein ROC2. | 0.86 | 0.03 | 2 | HD-ZIP | Folate | NA |
| Os06g0699700 | ADCS | Os05g0103000 | Similar to MYC1. | 0.90 | 0.01 | 2 | bHLH | Folate | NA |
| Os02g0273100 | ADCL | Os05g0103000 | Similar to MYC1. | 0.81 | 0.05 | 2 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os05g0106000 | Hypothetical conserved gene.;Zinc finger, C2H2-type domain containing protein. | 0.72 | 0.11 | 2 | C2H2 | Folate | NA |
| Os11g0484400 | DHFR | Os05g0106000 | Hypothetical conserved gene.;Zinc finger, C2H2-type domain containing protein. | 0.95 | 0.00 | 2 | C2H2 | Folate | NA |
| Os06g0699700 | ADCS | Os05g0155400 | Zinc finger, NHR/GATA-type domain containing protein. | 0.86 | 0.03 | 3 | GATA | Folate | NA |
| Os09g0553300 | DHNP3 | Os05g0155400 | Zinc finger, NHR/GATA-type domain containing protein. | 0.83 | 0.04 | 3 | GATA | Folate | NA |
| Os02g0273100 | ADCL | Os05g0155400 | Zinc finger, NHR/GATA-type domain containing protein. | 0.72 | 0.11 | 3 | GATA | Folate | NA |
| Os12g0623800 | DHFS | Os05g0317300 | Conserved hypothetical protein. | 0.92 | 0.01 | 2 | FAR1 | Folate | NA |
| Os11g0484400 | DHFR | Os05g0317300 | Conserved hypothetical protein. | 0.74 | 0.09 | 2 | FAR1 | Folate | NA |
| Os05g0244700 | ADCL | Os05g0437100 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.81 | 0.05 | 2 | ERF | Folate | NA |
| Os08g0556200 | DHNA | Os05g0437100 | Pathogenesis-related transcriptional factor and ERF domain containing protein. | 0.73 | 0.10 | 2 | ERF | Folate | NA |
| Os12g0446900 | DHFR | Os05g0515400 | Similar to Auxin response factor 14. | 0.83 | 0.04 | 2 | ARF | Folate | NA |
| Os11g0484400 | DHFR | Os05g0515400 | Similar to Auxin response factor 14. | 0.80 | 0.06 | 2 | ARF | Folate | NA |
| Os06g0699700 | ADCS | Os05g0569300 | Similar to G-box binding factor 1. | 0.91 | 0.01 | 3 | bZIP | Folate | NA |
| Os09g0553300 | DHNP3 | Os05g0569300 | Similar to G-box binding factor 1. | 0.94 | 0.00 | 3 | bZIP | Folate | NA |
| Os11g0484400 | DHFR | Os05g0569300 | Similar to G-box binding factor 1. | 0.93 | 0.01 | 3 | bZIP | Folate | NA |
| Os12g0623800 | DHFS | Os06g0101800 | Similar to NAC-domain protein 1-1. | 0.90 | 0.01 | 3 | NAC | Folate | NA |
| Os04g0662700 | GTPCHI | Os06g0101800 | Similar to NAC-domain protein 1-1. | 0.72 | 0.11 | 3 | NAC | Folate | NA |
| Os11g0484400 | DHFR | Os06g0101800 | Similar to NAC-domain protein 1-1. | 0.78 | 0.07 | 3 | NAC | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0105800 | Homeodomain-like containing protein. | 0.96 | 0.00 | 3 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os06g0105800 | Homeodomain-like containing protein. | 0.91 | 0.01 | 3 | MYB_related | Folate | NA |
| Os11g0484400 | DHFR | Os06g0105800 | Homeodomain-like containing protein. | 0.81 | 0.05 | 3 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os06g0164400 | Similar to predicted protein. | 0.75 | 0.09 | 5 | bHLH | Folate | NA |
| Os03g0111100 | FPGS | Os06g0164400 | Similar to predicted protein. | 0.81 | 0.05 | 5 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os06g0164400 | Similar to predicted protein. | 0.83 | 0.04 | 5 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os06g0164400 | Similar to predicted protein. | 0.79 | 0.06 | 5 | bHLH | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0164400 | Similar to predicted protein. | 0.70 | 0.12 | 5 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os06g0222400 | Similar to DRE-binding protein 2. | 0.88 | 0.02 | 3 | ERF | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0222400 | Similar to DRE-binding protein 2. | 0.83 | 0.04 | 3 | ERF | Folate | NA |
| Os02g0273100 | ADCL | Os06g0222400 | Similar to DRE-binding protein 2. | 0.74 | 0.09 | 3 | ERF | Folate | NA |
| Os06g0699700 | ADCS | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.93 | 0.01 | 6 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.87 | 0.03 | 6 | bHLH | Folate | NA |
| Os12g0446900 | DHFR | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.77 | 0.00 | 6 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.82 | 0.04 | 6 | bHLH | Folate | NA |
| Os02g0273100 | ADCL | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.86 | 0.03 | 6 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os06g0275600 | Similar to TA1 protein (Fragment).;Hypothetical conserved gene. | 0.70 | 0.12 | 6 | bHLH | Folate | NA |
| Os12g0446900 | DHFR | Os06g0303700 | Similar to Myb-like DNA-binding domain containing protein. | 0.81 | 0.05 | 2 | MYB_related | Folate | NA |
| Os11g0484400 | DHFR | Os06g0303700 | Similar to Myb-like DNA-binding domain containing protein. | 0.83 | 0.04 | 2 | MYB_related | Folate | NA |
| Os12g0623800 | DHFS | Os06g0571800 | Similar to GATA transcription factor 20.;Similar to GATA transcription factor 3 (AtGATA-3). | 0.97 | 0.00 | 2 | GATA | Folate | NA |
| Os10g0503200 | FPGS | Os06g0571800 | Similar to GATA transcription factor 20.;Similar to GATA transcription factor 3 (AtGATA-3). | 0.86 | 0.03 | 2 | GATA | Folate | NA |
| Os06g0699700 | ADCS | Os06g0609500 | Homeodomain-like containing protein. | 0.82 | 0.04 | 2 | G2-like | Folate | NA |
| Os11g0484400 | DHFR | Os06g0609500 | Homeodomain-like containing protein. | 0.89 | 0.02 | 2 | G2-like | Folate | NA |
| Os03g0111100 | FPGS | Os06g0646600 | Similar to cDNA, clone: J065162G03, full insert sequence.;Similar to Homeobox protein knotted-1-like 11. | 0.84 | 0.03 | 2 | TALE | Folate | NA |
| Os08g0556200 | DHNA | Os06g0646600 | Similar to cDNA, clone: J065162G03, full insert sequence.;Similar to Homeobox protein knotted-1-like 11. | 0.75 | 0.08 | 2 | TALE | Folate | NA |
| Os06g0699700 | ADCS | Os06g0663500 | SBP domain containing protein. | 0.95 | 0.00 | 3 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0663500 | SBP domain containing protein. | 0.92 | 0.01 | 3 | SBP | Folate | NA |
| Os02g0273100 | ADCL | Os06g0663500 | SBP domain containing protein. | 0.87 | 0.02 | 3 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0664800 | Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1). | 0.73 | 0.10 | 2 | G2-like | Folate | NA |
| Os06g0699700 | ADCS | Os06g0664800 | Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1). | 0.81 | 0.05 | 2 | G2-like | Folate | NA |
| Os12g0623800 | DHFS | Os06g0685700 | Similar to Auxin response factor 16. | 0.73 | 0.00 | 2 | ARF | Folate | NA |
| Os11g0484400 | DHFR | Os06g0685700 | Similar to Auxin response factor 16. | 0.89 | 0.02 | 2 | ARF | Folate | NA |
| Os09g0553300 | DHNP3 | Os06g0728700 | Homeodomain-like containing protein. | 0.76 | 0.08 | 3 | MYB_related | Folate | NA |
| Os02g0273100 | ADCL | Os06g0728700 | Homeodomain-like containing protein. | 0.89 | 0.02 | 3 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os06g0728700 | Homeodomain-like containing protein. | 0.87 | 0.02 | 3 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os07g0209800 | Similar to HALF-1. | 0.75 | 0.09 | 3 | bZIP | Folate | NA |
| Os11g0484400 | DHFR | Os07g0209800 | Similar to HALF-1. | 0.81 | 0.00 | 3 | bZIP | Folate | NA |
| Os03g0111100 | FPGS | Os07g0209800 | Similar to HALF-1. | 0.73 | 0.10 | 3 | bZIP | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os07g0543000 | Similar to Helix-loop-helix-like protein (Fragment). | 0.90 | 0.01 | 3 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os07g0543000 | Similar to Helix-loop-helix-like protein (Fragment). | 0.71 | 0.11 | 3 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os07g0543000 | Similar to Helix-loop-helix-like protein (Fragment). | 0.83 | 0.04 | 3 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os07g0596900 | Similar to SUSIBA2-like (WRKY transcription factor 80). | 0.98 | 0.00 | 2 | WRKY | Folate | NA |
| Os11g0484400 | DHFR | Os07g0596900 | Similar to SUSIBA2-like (WRKY transcription factor 80). | 0.71 | 0.11 | 2 | WRKY | Folate | NA |
| Os04g0662700 | GTPCHI | Os07g0623100 | Similar to ER66 protein (Fragment). | 0.89 | 0.02 | 3 | CAMTA | Folate | NA |
| Os09g0553300 | DHNP3 | Os07g0623100 | Similar to ER66 protein (Fragment). | 0.93 | 0.01 | 3 | CAMTA | Folate | NA |
| Os11g0484400 | DHFR | Os07g0623100 | Similar to ER66 protein (Fragment). | 0.97 | 0.00 | 3 | CAMTA | Folate | NA |
| Os12g0623800 | DHFS | Os07g0636100 | Protein of unknown function DUF573 family protein. | 0.90 | 0.02 | 3 | GeBP | Folate | NA |
| Os04g0662700 | GTPCHI | Os07g0636100 | Protein of unknown function DUF573 family protein. | 0.71 | 0.11 | 3 | GeBP | Folate | NA |
| Os10g0503200 | FPGS | Os07g0636100 | Protein of unknown function DUF573 family protein. | 0.92 | 0.01 | 3 | GeBP | Folate | NA |
| Os11g0484400 | DHFR | Os07g0640000 | Similar to PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3); methyltransferase/ zinc ion binding. | 0.82 | 0.05 | 2 | C2H2 | Folate | NA |
| Os12g0446900 | DHFR | Os07g0640000 | Similar to PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3); methyltransferase/ zinc ion binding. | 0.72 | 0.11 | 2 | C2H2 | Folate | NA |
| Os01g0238500 | ADCL | Os07g0674800 | Similar to AP2 domain transcription factor EREBP. | 0.73 | 0.10 | 2 | ERF | Folate | NA |
| Os08g0556200 | DHNA | Os07g0674800 | Similar to AP2 domain transcription factor EREBP. | 0.89 | 0.02 | 2 | ERF | Folate | NA |
| Os10g0503200 | FPGS | Os07g0685300 | Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1). | 0.71 | 0.11 | 2 | G2-like | Folate | NA |
| Os11g0484400 | DHFR | Os07g0685300 | Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1). | 0.70 | 0.12 | 2 | G2-like | Folate | NA |
| Os02g0273100 | ADCL | Os08g0136100 | Similar to Roc1. | 0.81 | 0.05 | 3 | HD-ZIP | Folate | NA |
| Os11g0484400 | DHFR | Os08g0136100 | Similar to Roc1. | 0.80 | 0.06 | 3 | HD-ZIP | Folate | NA |
| Os06g0699700 | ADCS | Os08g0136100 | Similar to Roc1. | 0.95 | 0.00 | 3 | HD-ZIP | Folate | NA |
| Os10g0503200 | FPGS | Os08g0144000 | Myb, DNA-binding domain containing protein. | 0.72 | 0.11 | 2 | MYB_related | Folate | NA |
| Os06g0699700 | ADCS | Os08g0144000 | Myb, DNA-binding domain containing protein. | 0.73 | 0.00 | 2 | MYB_related | Folate | NA |
| Os11g0484400 | DHFR | Os08g0346500 | Transfactor-like protein. | 0.84 | 0.00 | 2 | G2-like | Folate | NA |
| Os05g0517500 | GGH | Os08g0346500 | Transfactor-like protein. | 0.73 | 0.10 | 2 | G2-like | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os08g0416000 | Homeodomain leucine zipper protein.;Similar to Homeobox-leucine zipper protein HOX5. | 0.88 | 0.02 | 3 | HD-ZIP | Folate | NA |
| Os11g0484400 | DHFR | Os08g0416000 | Homeodomain leucine zipper protein.;Similar to Homeobox-leucine zipper protein HOX5. | 0.91 | 0.01 | 3 | HD-ZIP | Folate | NA |
| Os06g0699700 | ADCS | Os08g0416000 | Homeodomain leucine zipper protein.;Similar to Homeobox-leucine zipper protein HOX5. | 0.78 | 0.06 | 3 | HD-ZIP | Folate | NA |
| Os12g0623800 | DHFS | Os08g0485600 | Methyl-CpG DNA binding domain containing protein.;Hypothetical conserved gene. | 0.76 | 0.08 | 2 | C2H2 | Folate | NA |
| Os11g0484400 | DHFR | Os08g0485600 | Methyl-CpG DNA binding domain containing protein.;Hypothetical conserved gene. | 0.94 | 0.01 | 2 | C2H2 | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os08g0487700 | Helix-loop-helix DNA-binding domain containing protein. | 0.85 | 0.03 | 4 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os08g0487700 | Helix-loop-helix DNA-binding domain containing protein. | 0.84 | 0.04 | 4 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os08g0487700 | Helix-loop-helix DNA-binding domain containing protein. | 0.89 | 0.02 | 4 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os08g0487700 | Helix-loop-helix DNA-binding domain containing protein. | 0.81 | 0.05 | 4 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os08g0513700 | Similar to Squamosa promoter-binding-like protein 15. | 0.87 | 0.03 | 5 | SBP | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os08g0513700 | Similar to Squamosa promoter-binding-like protein 15. | 0.98 | 0.00 | 5 | SBP | Folate | NA |
| Os09g0553300 | DHNP3 | Os08g0513700 | Similar to Squamosa promoter-binding-like protein 15. | 0.81 | 0.05 | 5 | SBP | Folate | NA |
| Os11g0484400 | DHFR | Os08g0513700 | Similar to Squamosa promoter-binding-like protein 15. | 0.99 | 0.00 | 5 | SBP | Folate | NA |
| Os06g0699700 | ADCS | Os08g0513700 | Similar to Squamosa promoter-binding-like protein 15. | 0.72 | 0.11 | 5 | SBP | Folate | NA |
| Os10g0503200 | FPGS | Os08g0520500 | Similar to Isoform 2 of Auxin response factor 21. | 0.89 | 0.02 | 3 | ARF | Folate | NA |
| Os12g0623800 | DHFS | Os08g0520500 | Similar to Isoform 2 of Auxin response factor 21. | 0.76 | 0.08 | 3 | ARF | Folate | NA |
| Os11g0484400 | DHFR | Os08g0520500 | Similar to Isoform 2 of Auxin response factor 21. | 0.85 | 0.03 | 3 | ARF | Folate | NA |
| Os12g0623800 | DHFS | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.78 | 0.07 | 6 | bHLH | Folate | NA |
| Os04g0662700 | GTPCHI | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.83 | 0.04 | 6 | bHLH | Folate | NA |
| Os10g0503200 | FPGS | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.92 | 0.01 | 6 | bHLH | Folate | NA |
| Os02g0273100 | ADCL | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.75 | 0.09 | 6 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.84 | 0.04 | 6 | bHLH | Folate | NA |
| Os07g0618500 | DHPS/HPPK | Os08g0524800 | Similar to TA1 protein (Fragment). | 0.72 | 0.11 | 6 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os08g0537900 | Hypothetical conserved gene.;Similar to predicted protein. | 0.99 | 0.00 | 4 | ERF | Folate | NA |
| Os11g0484400 | DHFR | Os08g0537900 | Hypothetical conserved gene.;Similar to predicted protein. | 0.76 | 0.08 | 4 | ERF | Folate | NA |
| Os09g0553300 | DHNP3 | Os08g0537900 | Hypothetical conserved gene.;Similar to predicted protein. | 0.96 | 0.00 | 4 | ERF | Folate | NA |
| Os02g0273100 | ADCL | Os08g0537900 | Hypothetical conserved gene.;Similar to predicted protein. | 0.93 | 0.01 | 4 | ERF | Folate | NA |
| Os05g0517500 | GGH | Os09g0280500 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.82 | 0.05 | 2 | bZIP | Folate | NA |
| Os08g0556200 | DHNA | Os09g0280500 | Similar to Transcription factor HBP-1b(C38) (Fragment). | 0.76 | 0.08 | 2 | bZIP | Folate | NA |
| Os09g0553300 | DHNP3 | Os09g0369000 | Hypothetical gene. | 0.81 | 0.05 | 2 | ERF | Folate | NA |
| Os06g0699700 | ADCS | Os09g0369000 | Hypothetical gene. | 0.80 | 0.06 | 2 | ERF | Folate | NA |
| Os03g0111100 | FPGS | Os09g0414300 | Non-protein coding transcript. | 0.76 | 0.08 | 2 | MYB | Folate | NA |
| Os12g0623800 | DHFS | Os09g0414300 | Non-protein coding transcript. | 0.91 | 0.01 | 2 | MYB | Folate | NA |
| Os04g0662700 | GTPCHI | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.79 | 0.06 | 6 | bHLH | Folate | NA |
| Os12g0623800 | DHFS | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.78 | 0.07 | 6 | bHLH | Folate | NA |
| Os10g0503200 | FPGS | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.91 | 0.01 | 6 | bHLH | Folate | NA |
| Os12g0446900 | DHFR | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.76 | 0.00 | 6 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.73 | 0.10 | 6 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os09g0474100 | Similar to TA1 protein (Fragment). | 0.81 | 0.05 | 6 | bHLH | Folate | NA |
| Os03g0111100 | FPGS | Os09g0487900 | Helix-loop-helix DNA-binding domain containing protein. | 0.78 | 0.07 | 3 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os09g0487900 | Helix-loop-helix DNA-binding domain containing protein. | 0.79 | 0.06 | 3 | bHLH | Folate | NA |
| Os11g0484400 | DHFR | Os09g0487900 | Helix-loop-helix DNA-binding domain containing protein. | 0.77 | 0.07 | 3 | bHLH | Folate | NA |
| Os02g0273100 | ADCL | Os09g0501600 | Similar to MYC1. | 0.72 | 0.11 | 3 | bHLH | Folate | NA |
| Os06g0154600 | DHNA | Os09g0501600 | Similar to MYC1. | 0.77 | 0.07 | 3 | bHLH | Folate | NA |
| Os10g0503200 | FPGS | Os09g0501600 | Similar to MYC1. | 0.86 | 0.03 | 3 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os09g0526200 | Similar to Homeobox-leucine zipper protein ROC6. | 0.80 | 0.05 | 3 | HD-ZIP | Folate | NA |
| Os02g0273100 | ADCL | Os09g0526200 | Similar to Homeobox-leucine zipper protein ROC6. | 0.81 | 0.05 | 3 | HD-ZIP | Folate | NA |
| Os11g0484400 | DHFR | Os09g0526200 | Similar to Homeobox-leucine zipper protein ROC6. | 0.87 | 0.02 | 3 | HD-ZIP | Folate | NA |
| Os04g0662700 | GTPCHI | Os09g0527900 | Similar to Hd1-like protein.;Hypothetical conserved gene. | 0.85 | 0.03 | 4 | DBB | Folate | NA |
| Os12g0623800 | DHFS | Os09g0527900 | Similar to Hd1-like protein.;Hypothetical conserved gene. | 0.72 | 0.10 | 4 | DBB | Folate | NA |
| Os06g0699700 | ADCS | Os09g0527900 | Similar to Hd1-like protein.;Hypothetical conserved gene. | 0.79 | 0.06 | 4 | DBB | Folate | NA |
| Os10g0503200 | FPGS | Os09g0527900 | Similar to Hd1-like protein.;Hypothetical conserved gene. | 0.76 | 0.08 | 4 | DBB | Folate | NA |
| Os08g0556200 | DHNA | Os09g0568200 | Similar to DNA polymerase epsilon subunit 3. | 0.85 | 0.03 | 2 | NF-YB | Folate | NA |
| Os11g0484400 | DHFR | Os09g0568200 | Similar to DNA polymerase epsilon subunit 3. | 0.80 | 0.00 | 2 | NF-YB | Folate | NA |
| Os11g0484400 | DHFR | Os10g0375600 | Similar to ER66 protein (Fragment). | 0.96 | 0.00 | 3 | CAMTA | Folate | NA |
| Os04g0662700 | GTPCHI | Os10g0375600 | Similar to ER66 protein (Fragment). | 0.74 | 0.09 | 3 | CAMTA | Folate | NA |
| Os09g0553300 | DHNP3 | Os10g0375600 | Similar to ER66 protein (Fragment). | 0.83 | 0.04 | 3 | CAMTA | Folate | NA |
| Os12g0623800 | DHFS | Os10g0391300 | DNA-binding SAP domain containing protein. | 0.77 | 0.07 | 2 | C3H | Folate | NA |
| Os11g0484400 | DHFR | Os10g0391300 | DNA-binding SAP domain containing protein. | 0.80 | 0.05 | 2 | C3H | Folate | NA |
| Os12g0623800 | DHFS | Os10g0516500 | Conserved hypothetical protein. | 0.72 | 0.10 | 4 | Trihelix | Folate | NA |
| Os02g0273100 | ADCL | Os10g0516500 | Conserved hypothetical protein. | 0.78 | 0.07 | 4 | Trihelix | Folate | NA |
| Os04g0662700 | GTPCHI | Os10g0516500 | Conserved hypothetical protein. | 0.90 | 0.01 | 4 | Trihelix | Folate | NA |
| Os06g0699700 | ADCS | Os10g0516500 | Conserved hypothetical protein. | 0.84 | 0.03 | 4 | Trihelix | Folate | NA |
| Os06g0699700 | ADCS | Os10g0556200 | Hypothetical conserved gene. | 0.78 | 0.00 | 2 | bHLH | Folate | NA |
| Os12g0446900 | DHFR | Os10g0556200 | Hypothetical conserved gene. | 0.75 | 0.08 | 2 | bHLH | Folate | NA |
| Os06g0699700 | ADCS | Os10g0567300 | SH2 motif domain containing protein. | 0.85 | 0.03 | 2 | STAT | Folate | NA |
| Os11g0484400 | DHFR | Os10g0567300 | SH2 motif domain containing protein. | 0.98 | 0.00 | 2 | STAT | Folate | NA |
| Os06g0699700 | ADCS | Os10g0575600 | Homeodomain-related containing protein. | 0.80 | 0.06 | 2 | HD-ZIP | Folate | NA |
| Os02g0273100 | ADCL | Os10g0575600 | Homeodomain-related containing protein. | 0.79 | 0.06 | 2 | HD-ZIP | Folate | NA |
| Os04g0662700 | GTPCHI | Os11g0116900 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.87 | 0.02 | 2 | WRKY | Folate | NA |
| Os12g0623800 | DHFS | Os11g0116900 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.77 | 0.07 | 2 | WRKY | Folate | NA |
| Os04g0662700 | GTPCHI | Os11g0168500 | Hypothetical conserved gene. | 0.73 | 0.10 | 2 | ERF | Folate | NA |
| Os06g0154600 | DHNA | Os11g0168500 | Hypothetical conserved gene. | 0.92 | 0.01 | 2 | ERF | Folate | NA |
| Os06g0699700 | ADCS | Os12g0102300 | Similar to WRKY transcription factor 57. | 0.92 | 0.01 | 2 | WRKY | Folate | NA |
| Os02g0273100 | ADCL | Os12g0102300 | Similar to WRKY transcription factor 57. | 0.95 | 0.00 | 2 | WRKY | Folate | NA |
| Os04g0662700 | GTPCHI | Os12g0116400 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.91 | 0.01 | 3 | WRKY | Folate | NA |
| Os03g0111100 | FPGS | Os12g0116400 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.71 | 0.00 | 3 | WRKY | Folate | NA |
| Os06g0699700 | ADCS | Os12g0116400 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.79 | 0.06 | 3 | WRKY | Folate | NA |
| Os10g0503200 | FPGS | Os12g0173300 | Transcription factor, TCP domain containing protein. | 0.83 | 0.04 | 2 | TCP | Folate | NA |
| Os12g0446900 | DHFR | Os12g0173300 | Transcription factor, TCP domain containing protein. | 0.85 | 0.00 | 2 | TCP | Folate | NA |
| Os12g0623800 | DHFS | Os12g0279100 | Transcription factor jumonji domain containing protein. | 0.75 | 0.09 | 2 | C2H2 | Folate | NA |
| Os11g0484400 | DHFR | Os12g0279100 | Transcription factor jumonji domain containing protein. | 0.88 | 0.02 | 2 | C2H2 | Folate | NA |
| Os06g0699700 | ADCS | Os12g0507300 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.96 | 0.00 | 2 | WRKY | Folate | NA |
| Os11g0484400 | DHFR | Os12g0507300 | Similar to WRKY DNA binding domain containing protein, expressed. | 0.78 | 0.07 | 2 | WRKY | Folate | NA |
| PCC | Degree | TF Family | Pathway |