Search putative SNPs in starch biosynthesis related genes:
| SNP type | SNP ID | Gene ID | Allele | Chr | Pos | SNP effect | Category | Gene name | Gene descriptions | PM | PH9 | MASRIA | MRM16 | MRQ76 | PS | MR297 | MR307 | MR12H | MR127 | MRQ74 | MR103 | MR106 | Gene ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| polymorphic | chr06_15348815 | Os06g0367100 | G/A/T | 6 | 15348815 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | A | G | G | A | G | A | G | T | A | G | Os06g0367100 |
| polymorphic | chr06_15348815 | Os06g0367100 | G/A/T | 6 | 15348815 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | A | G | G | A | G | A | G | T | A | G | Os06g0367100 |
| polymorphic | chr09_17856304 | Os09g0469400 | A/G/C | 9 | 17856304 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | G | C | G | A | A | C | G | A | A | C | G | G | C | Os09g0469400 |
| polymorphic | chr09_17856304 | Os09g0469400 | A/G/C | 9 | 17856304 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | G | C | G | A | A | C | G | A | A | C | G | G | C | Os09g0469400 |
| unique | chr01_25354488 | Os01g0633100 | A/G | 1 | 25354488 | intron_variant | AGPASE | OsAGPL2 | ADP-glucose pyrophosphorylase large subunit, Controll of starch biosynthesis in endosperm development | G | A | A | A | A | A | A | A | A | A | A | A | A | Os01g0633100 |
| unique | chr02_19356429 | Os02g0528200 | C/G | 2 | 19356429 | intron_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | C | C | G | C | C | C | C | C | C | C | C | C | C | Os02g0528200 |
| unique | chr02_19360872 | Os02g0528200 | G/A | 2 | 19360872 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | G | G | G | G | G | G | G | G | G | G | A | G | G | Os02g0528200 |
| unique | chr02_19360877 | Os02g0528200 | T/C | 2 | 19360877 | missense_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | T | T | T | T | T | C | T | T | Os02g0528200 |
| unique | chr02_19360880 | Os02g0528200 | T/C | 2 | 19360880 | missense_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | T | T | T | T | T | C | T | T | Os02g0528200 |
| unique | chr02_19360881 | Os02g0528200 | G/A | 2 | 19360881 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | G | G | G | G | G | G | G | G | G | G | A | G | G | Os02g0528200 |
| unique | chr02_19360907 | Os02g0528200 | A/G | 2 | 19360907 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | A | A | A | A | A | A | A | A | A | A | G | A | A | Os02g0528200 |
| unique | chr02_19360911 | Os02g0528200 | A/G | 2 | 19360911 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | A | A | A | A | A | A | A | A | A | A | G | A | A | Os02g0528200 |
| unique | chr02_19360914 | Os02g0528200 | T/C | 2 | 19360914 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | T | T | T | T | T | C | T | T | Os02g0528200 |
| unique | chr02_19360968 | Os02g0528200 | A/G | 2 | 19360968 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | A | G | A | A | A | A | A | A | A | A | A | A | A | Os02g0528200 |
| unique | chr02_19361448 | Os02g0528200 | T/C | 2 | 19361448 | synonymous_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | C | T | T | T | T | T | T | T | Os02g0528200 |
| unique | chr02_19363712 | Os02g0528200 | C/A | 2 | 19363712 | intron_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os02g0528200 |
| unique | chr02_19363729 | Os02g0528200 | T/A | 2 | 19363729 | intron_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | T | T | T | T | T | A | T | T | Os02g0528200 |
| unique | chr02_19363750 | Os02g0528200 | C/A | 2 | 19363750 | intron_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os02g0528200 |
| unique | chr02_19363756 | Os02g0528200 | T/A | 2 | 19363756 | intron_variant | Branching enzyme | SBE3/OsBEIIb | Starch branching enzyme 3, Starch synthesis | T | T | T | T | T | T | T | T | T | T | A | T | T | Os02g0528200 |
| unique | chr02_31236236 | Os02g0744700 | G/A | 2 | 31236236 | synonymous_variant | starch synthases | SSIIb | Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21).;Similar to Soluble starch synthase 2-2, chloroplastic/amyloplastic. | G | G | G | G | G | G | G | G | G | G | A | G | G | Os02g0744700 |
| unique | chr03_30099853 | Os03g0735000 | C/T | 3 | 30099853 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | C | C | T | C | C | C | C | C | C | C | C | C | C | Os03g0735000 |
| unique | chr03_30102334 | Os03g0735000 | A/C | 3 | 30102334 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | A | A | C | A | A | A | A | A | A | A | A | A | A | Os03g0735000 |
| unique | chr03_30102339 | Os03g0735000 | A/G | 3 | 30102339 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | A | A | G | A | A | A | A | A | A | A | A | A | A | Os03g0735000 |
| unique | chr03_30102344 | Os03g0735000 | C/T | 3 | 30102344 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | C | C | C | C | C | T | C | C | C | C | C | C | C | Os03g0735000 |
| unique | chr03_30102363 | Os03g0735000 | T/C | 3 | 30102363 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | C | T | T | T | T | T | T | T | T | T | T | Os03g0735000 |
| unique | chr03_30102384 | Os03g0735000 | G/A | 3 | 30102384 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os03g0735000 |
| unique | chr03_30102435 | Os03g0735000 | G/A | 3 | 30102435 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os03g0735000 |
| unique | chr03_30102440 | Os03g0735000 | G/A | 3 | 30102440 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os03g0735000 |
| unique | chr03_30102449 | Os03g0735000 | T/A | 3 | 30102449 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | A | T | T | T | T | T | T | T | T | T | T | Os03g0735000 |
| unique | chr03_30102463 | Os03g0735000 | T/A | 3 | 30102463 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | A | T | T | T | T | T | T | T | T | T | Os03g0735000 |
| unique | chr03_30102469 | Os03g0735000 | T/C | 3 | 30102469 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | C | T | T | T | T | T | T | T | T | T | Os03g0735000 |
| unique | chr03_30102480 | Os03g0735000 | T/A | 3 | 30102480 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | T | T | T | T | T | A | T | T | T | T | Os03g0735000 |
| unique | chr03_30102485 | Os03g0735000 | G/A | 3 | 30102485 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os03g0735000 |
| unique | chr03_30102519 | Os03g0735000 | T/C | 3 | 30102519 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | T | T | T | T | T | C | T | T | T | T | Os03g0735000 |
| unique | chr03_30102525 | Os03g0735000 | G/T | 3 | 30102525 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | G | G | G | T | G | G | G | G | G | G | G | Os03g0735000 |
| unique | chr03_30102526 | Os03g0735000 | G/A | 3 | 30102526 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | G | G | G | G | G | G | G | G | G | A | G | Os03g0735000 |
| unique | chr03_30102564 | Os03g0735000 | T/C | 3 | 30102564 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | T | T | T | T | T | C | T | T | T | T | Os03g0735000 |
| unique | chr03_30102569 | Os03g0735000 | A/G | 3 | 30102569 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | A | A | A | A | A | A | A | A | G | A | A | A | A | Os03g0735000 |
| unique | chr03_30102580 | Os03g0735000 | T/C | 3 | 30102580 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | T | T | T | T | T | T | T | T | C | T | T | T | T | Os03g0735000 |
| unique | chr03_30102599 | Os03g0735000 | A/T | 3 | 30102599 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | A | A | A | A | A | A | A | A | A | A | A | T | A | Os03g0735000 |
| unique | chr03_30102600 | Os03g0735000 | G/T | 3 | 30102600 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | G | G | G | G | G | G | T | G | G | G | G | Os03g0735000 |
| unique | chr03_30102791 | Os03g0735000 | G/T | 3 | 30102791 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | G | G | T | G | G | G | G | G | G | G | G | G | G | Os03g0735000 |
| unique | chr03_30104060 | Os03g0735000 | A/C | 3 | 30104060 | intron_variant | AGPASE | OsAGPL1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit, Starch synthesis in the leaf;Similar to Glucose-1-phosphate adenylyltransferase. | A | A | A | A | A | A | A | A | A | A | C | A | A | Os03g0735000 |
| unique | chr05_19155425 | Os05g0393700 | C/T | 5 | 19155425 | missense_variant | starch debranching enzymes | OsISA2 | Starch-debranching enzyme, Isoamylase, Starch biosynthesis as the ISA1-ISA2 hetero-oligomer in leaf | C | C | C | C | T | C | C | C | C | C | C | C | C | Os05g0393700 |
| unique | chr05_26492186 | Os05g0533600 | T/A | 5 | 26492186 | intron_variant | starch synthases | OsSSIVb | Starch synthase, Starch biosynthesis | T | T | T | T | T | T | A | T | T | T | T | T | T | Os05g0533600 |
| unique | chr06_15335715 | Os06g0367100 | C/A | 6 | 15335715 | 5_prime_UTR_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | A | C | C | Os06g0367100 |
| unique | chr06_15344872 | Os06g0367100 | G/T | 6 | 15344872 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | T | G | Os06g0367100 |
| unique | chr06_15344947 | Os06g0367100 | G/T | 6 | 15344947 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | T | G | G | G | Os06g0367100 |
| unique | chr06_15344949 | Os06g0367100 | C/T | 6 | 15344949 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | T | C | C | C | Os06g0367100 |
| unique | chr06_15344955 | Os06g0367100 | C/A | 6 | 15344955 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | A | C | C | C | Os06g0367100 |
| unique | chr06_15344957 | Os06g0367100 | G/A | 6 | 15344957 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | A | G | G | G | Os06g0367100 |
| unique | chr06_15344985 | Os06g0367100 | G/A | 6 | 15344985 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15344990 | Os06g0367100 | C/T | 6 | 15344990 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | T | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15345166 | Os06g0367100 | A/C | 6 | 15345166 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | A | A | A | A | A | A | A | A | A | A | A | A | Os06g0367100 |
| unique | chr06_15345233 | Os06g0367100 | G/A | 6 | 15345233 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os06g0367100 |
| unique | chr06_15345239 | Os06g0367100 | A/G | 6 | 15345239 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | A | A | A | A | A | A | G | A | A | A | A | Os06g0367100 |
| unique | chr06_15345462 | Os06g0367100 | C/A | 6 | 15345462 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | A | C | C | C | C | Os06g0367100 |
| unique | chr06_15345467 | Os06g0367100 | C/T | 6 | 15345467 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | T | C | C | C | C | Os06g0367100 |
| unique | chr06_15345476 | Os06g0367100 | C/T | 6 | 15345476 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | T | C | C | C | C | Os06g0367100 |
| unique | chr06_15345489 | Os06g0367100 | G/A | 6 | 15345489 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os06g0367100 |
| unique | chr06_15345643 | Os06g0367100 | G/C | 6 | 15345643 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | G | C | Os06g0367100 |
| unique | chr06_15345655 | Os06g0367100 | C/T | 6 | 15345655 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | C | C | T | Os06g0367100 |
| unique | chr06_15345700 | Os06g0367100 | G/A | 6 | 15345700 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | A | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15345713 | Os06g0367100 | C/T | 6 | 15345713 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | T | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15345722 | Os06g0367100 | G/A | 6 | 15345722 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | A | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15345724 | Os06g0367100 | C/T | 6 | 15345724 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | T | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15345728 | Os06g0367100 | T/C | 6 | 15345728 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | T | T | T | T | T | C | T | T | T | T | T | T | Os06g0367100 |
| unique | chr06_15345746 | Os06g0367100 | G/A | 6 | 15345746 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os06g0367100 |
| unique | chr06_15346999 | Os06g0367100 | C/T | 6 | 15346999 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | C | C | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15347069 | Os06g0367100 | G/A | 6 | 15347069 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | A | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15347162 | Os06g0367100 | C/A | 6 | 15347162 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | C | A | C | Os06g0367100 |
| unique | chr06_15347174 | Os06g0367100 | T/A | 6 | 15347174 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | T | T | T | T | T | T | T | T | T | T | A | T | Os06g0367100 |
| unique | chr06_15347195 | Os06g0367100 | G/A | 6 | 15347195 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | A | G | Os06g0367100 |
| unique | chr06_15347198 | Os06g0367100 | G/A | 6 | 15347198 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | A | G | Os06g0367100 |
| unique | chr06_15347250 | Os06g0367100 | T/A | 6 | 15347250 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | T | T | T | T | T | T | T | T | T | T | A | T | Os06g0367100 |
| unique | chr06_15347255 | Os06g0367100 | G/A | 6 | 15347255 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | A | G | Os06g0367100 |
| unique | chr06_15347270 | Os06g0367100 | G/A | 6 | 15347270 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os06g0367100 |
| unique | chr06_15347416 | Os06g0367100 | G/C | 6 | 15347416 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | G | C | Os06g0367100 |
| unique | chr06_15347440 | Os06g0367100 | T/C | 6 | 15347440 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | T | T | T | T | T | T | T | T | T | T | T | C | Os06g0367100 |
| unique | chr06_15347977 | Os06g0367100 | A/T | 6 | 15347977 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | A | A | A | A | A | A | A | A | A | T | A | Os06g0367100 |
| unique | chr06_15348257 | Os06g0367100 | A/G | 6 | 15348257 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | A | A | A | A | A | A | A | A | G | A | A | Os06g0367100 |
| unique | chr06_15348755 | Os06g0367100 | A/G | 6 | 15348755 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | A | A | A | A | A | A | A | A | G | A | A | Os06g0367100 |
| unique | chr06_15348827 | Os06g0367100 | C/A | 6 | 15348827 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | A | C | C | Os06g0367100 |
| unique | chr06_15348876 | Os06g0367100 | C/T | 6 | 15348876 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | T | C | C | C | C | Os06g0367100 |
| unique | chr06_15348967 | Os06g0367100 | A/C | 6 | 15348967 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | A | A | A | A | A | A | A | A | A | A | A | A | Os06g0367100 |
| unique | chr06_15348971 | Os06g0367100 | G/C | 6 | 15348971 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | G | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349022 | Os06g0367100 | G/A | 6 | 15349022 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349044 | Os06g0367100 | C/T | 6 | 15349044 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | C | C | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15349056 | Os06g0367100 | C/T | 6 | 15349056 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | C | C | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15349100 | Os06g0367100 | A/C | 6 | 15349100 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | A | A | A | A | A | A | A | A | A | C | A | Os06g0367100 |
| unique | chr06_15349134 | Os06g0367100 | C/T | 6 | 15349134 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | T | C | C | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15349142 | Os06g0367100 | G/A | 6 | 15349142 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349458 | Os06g0367100 | G/T | 6 | 15349458 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | T | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349477 | Os06g0367100 | C/T | 6 | 15349477 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | T | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15349481 | Os06g0367100 | C/A | 6 | 15349481 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | A | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15349636 | Os06g0367100 | G/A | 6 | 15349636 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | A | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349647 | Os06g0367100 | A/T | 6 | 15349647 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | T | A | A | A | A | A | A | A | A | A | A | Os06g0367100 |
| unique | chr06_15349708 | Os06g0367100 | G/A | 6 | 15349708 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15349716 | Os06g0367100 | C/T | 6 | 15349716 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | T | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15352729 | Os06g0367100 | G/C | 6 | 15352729 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | C | G | G | G | Os06g0367100 |
| unique | chr06_15354930 | Os06g0367100 | C/A | 6 | 15354930 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | A | C | C | C | C | Os06g0367100 |
| unique | chr06_15355672 | Os06g0367100 | C/T | 6 | 15355672 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | T | C | C | C | C | C | C | C | C | C | C | Os06g0367100 |
| unique | chr06_15355681 | Os06g0367100 | A/C | 6 | 15355681 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | A | C | A | A | A | A | A | A | A | A | A | A | Os06g0367100 |
| unique | chr06_15355688 | Os06g0367100 | G/A | 6 | 15355688 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15355689 | Os06g0367100 | G/A | 6 | 15355689 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15355690 | Os06g0367100 | G/A | 6 | 15355690 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | A | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15356940 | Os06g0367100 | T/A | 6 | 15356940 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | T | T | T | T | T | T | T | T | T | T | T | T | Os06g0367100 |
| unique | chr06_15356951 | Os06g0367100 | A/G | 6 | 15356951 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | A | A | A | A | A | A | A | A | A | A | A | A | Os06g0367100 |
| unique | chr06_15356952 | Os06g0367100 | C/G | 6 | 15356952 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | C | C | G | Os06g0367100 |
| unique | chr06_15356960 | Os06g0367100 | G/A | 6 | 15356960 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | G | G | A | Os06g0367100 |
| unique | chr06_15356961 | Os06g0367100 | G/A | 6 | 15356961 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15357001 | Os06g0367100 | G/A | 6 | 15357001 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | A | G | G | G | G | G | G | G | G | G | G | G | G | Os06g0367100 |
| unique | chr06_15363336 | Os06g0367100 | G/T | 6 | 15363336 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | T | G | G | Os06g0367100 |
| unique | chr06_15363345 | Os06g0367100 | C/G | 6 | 15363345 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | G | C | C | Os06g0367100 |
| unique | chr06_15363349 | Os06g0367100 | G/T | 6 | 15363349 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | T | G | G | Os06g0367100 |
| unique | chr06_15363354 | Os06g0367100 | G/T | 6 | 15363354 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | G | G | G | G | G | G | G | G | G | G | T | G | G | Os06g0367100 |
| unique | chr06_15364016 | Os06g0367100 | C/A | 6 | 15364016 | intron_variant | Branching enzyme | SBEIII | Glycoside hydrolase, subgroup, catalytic core domain containing protein.;Similar to starch branching enzyme III. | C | C | C | C | C | C | C | C | C | C | A | C | C | Os06g0367100 |
| unique | chr06_3082326 | Os06g0160700 | T/C | 6 | 3082326 | missense_variant | starch synthases | OsSSI|SSS1 | Starch synthase, Starch biosynthesis | T | T | T | C | T | T | T | T | T | T | T | T | T | Os06g0160700 |
| unique | chr06_3083400 | Os06g0160700 | T/A | 6 | 3083400 | intron_variant | starch synthases | OsSSI|SSS1 | Starch synthase, Starch biosynthesis | T | T | T | T | T | T | A | T | T | T | T | T | T | Os06g0160700 |
| unique | chr06_30903805 | Os06g0726400 | T/C | 6 | 30903805 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | T | T | T | T | T | T | T | T | T | C | T | T | T | Os06g0726400 |
| unique | chr06_30903815 | Os06g0726400 | C/T | 6 | 30903815 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | C | C | C | C | C | T | C | C | C | Os06g0726400 |
| unique | chr06_30904033 | Os06g0726400 | C/T | 6 | 30904033 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | C | T | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904036 | Os06g0726400 | G/A | 6 | 30904036 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | A | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904052 | Os06g0726400 | C/T | 6 | 30904052 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | T | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904159 | Os06g0726400 | A/G | 6 | 30904159 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | G | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904159 | Os06g0726400 | A/G | 6 | 30904159 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | G | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904175 | Os06g0726400 | G/A | 6 | 30904175 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | G | G | G | G | G | A | G | G | G | Os06g0726400 |
| unique | chr06_30904175 | Os06g0726400 | G/A | 6 | 30904175 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | G | G | G | G | G | A | G | G | G | Os06g0726400 |
| unique | chr06_30904228 | Os06g0726400 | C/T | 6 | 30904228 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | T | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904228 | Os06g0726400 | C/T | 6 | 30904228 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | T | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904246 | Os06g0726400 | A/G | 6 | 30904246 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | G | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904246 | Os06g0726400 | A/G | 6 | 30904246 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | G | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904269 | Os06g0726400 | C/G | 6 | 30904269 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | G | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904269 | Os06g0726400 | C/G | 6 | 30904269 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | C | C | C | G | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904305 | Os06g0726400 | G/T | 6 | 30904305 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | T | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904305 | Os06g0726400 | G/T | 6 | 30904305 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | T | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904321 | Os06g0726400 | G/A | 6 | 30904321 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | A | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904321 | Os06g0726400 | G/A | 6 | 30904321 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | A | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904352 | Os06g0726400 | A/C | 6 | 30904352 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | C | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904352 | Os06g0726400 | A/C | 6 | 30904352 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | A | A | A | A | C | A | A | A | A | A | A | A | A | Os06g0726400 |
| unique | chr06_30904552 | Os06g0726400 | C/T | 6 | 30904552 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | T | C | C | C | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904552 | Os06g0726400 | C/T | 6 | 30904552 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | C | T | C | C | C | C | C | C | C | C | C | C | C | Os06g0726400 |
| unique | chr06_30904568 | Os06g0726400 | G/A | 6 | 30904568 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | A | G | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904568 | Os06g0726400 | G/A | 6 | 30904568 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | A | G | G | G | G | G | G | G | G | G | Os06g0726400 |
| unique | chr06_30904574 | Os06g0726400 | G/A | 6 | 30904574 | 5_prime_UTR_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | G | G | G | G | G | G | G | G | A | Os06g0726400 |
| unique | chr06_30904574 | Os06g0726400 | G/A | 6 | 30904574 | intron_variant | Branching enzyme | SBE1 | Starch branching enzyme;Similar to 1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic.;Hypothetical conserved gene.;Starch branching enzyme, Splicing variant | G | G | G | G | G | G | G | G | G | G | G | G | A | Os06g0726400 |
| unique | chr06_6748760 | Os06g0229800 | T/G | 6 | 6748760 | missense_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | T | T | G | T | T | T | T | T | T | T | T | T | T | Os06g0229800 |
| unique | chr06_6748951 | Os06g0229800 | T/G | 6 | 6748951 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | T | T | T | T | T | T | T | T | T | T | G | T | T | Os06g0229800 |
| unique | chr06_6749038 | Os06g0229800 | A/C | 6 | 6749038 | missense_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | A | A | A | A | A | A | A | A | A | A | C | A | A | Os06g0229800 |
| unique | chr06_6749376 | Os06g0229800 | C/T | 6 | 6749376 | synonymous_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | T | C | C | Os06g0229800 |
| unique | chr06_6749538 | Os06g0229800 | C/G | 6 | 6749538 | missense_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | G | C | C | Os06g0229800 |
| unique | chr06_6750382 | Os06g0229800 | A/G | 6 | 6750382 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | A | A | A | A | A | A | A | A | A | A | G | A | A | Os06g0229800 |
| unique | chr06_6750385 | Os06g0229800 | C/T | 6 | 6750385 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | T | C | C | Os06g0229800 |
| unique | chr06_6750445 | Os06g0229800 | G/C | 6 | 6750445 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | G | G | G | G | G | G | G | G | G | G | C | G | G | Os06g0229800 |
| unique | chr06_6750464 | Os06g0229800 | C/T | 6 | 6750464 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | T | C | C | Os06g0229800 |
| unique | chr06_6750563 | Os06g0229800 | C/T | 6 | 6750563 | synonymous_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | T | C | C | Os06g0229800 |
| unique | chr06_6750569 | Os06g0229800 | T/C | 6 | 6750569 | synonymous_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | T | T | T | T | T | T | T | T | T | T | C | T | T | Os06g0229800 |
| unique | chr06_6750611 | Os06g0229800 | G/A | 6 | 6750611 | synonymous_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | G | G | G | G | G | G | G | G | G | G | A | G | G | Os06g0229800 |
| unique | chr06_6750636 | Os06g0229800 | A/T | 6 | 6750636 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | A | A | A | A | A | A | A | A | A | A | T | A | A | Os06g0229800 |
| unique | chr06_6751577 | Os06g0229800 | C/G | 6 | 6751577 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | C | C | C | C | C | C | C | C | C | C | G | C | C | Os06g0229800 |
| unique | chr06_6751846 | Os06g0229800 | A/G | 6 | 6751846 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | A | A | A | A | A | A | A | A | A | A | G | A | A | Os06g0229800 |
| unique | chr06_6751860 | Os06g0229800 | T/A | 6 | 6751860 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | T | T | T | T | T | T | T | T | T | T | A | T | T | Os06g0229800 |
| unique | chr06_6751885 | Os06g0229800 | G/A | 6 | 6751885 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | G | G | G | G | G | G | G | G | G | G | A | G | G | Os06g0229800 |
| unique | chr06_6751886 | Os06g0229800 | G/A | 6 | 6751886 | intron_variant | starch synthases | ALK|SSIIa | Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain | G | G | G | G | G | G | G | G | G | G | A | G | G | Os06g0229800 |
| unique | chr07_12918518 | Os07g0412100 | T/A | 7 | 12918518 | synonymous_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | T | T | T | T | T | T | T | T | T | T | A | T | T | Os07g0412100 |
| unique | chr07_12918526 | Os07g0412100 | C/A | 7 | 12918526 | missense_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os07g0412100 |
| unique | chr07_12918533 | Os07g0412100 | C/A | 7 | 12918533 | missense_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os07g0412100 |
| unique | chr07_12918542 | Os07g0412100 | C/A | 7 | 12918542 | missense_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os07g0412100 |
| unique | chr07_12919745 | Os07g0412100 | G/T | 7 | 12919745 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | G | G | G | G | G | G | G | G | G | G | T | G | G | Os07g0412100 |
| unique | chr07_12919751 | Os07g0412100 | G/T | 7 | 12919751 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | G | G | G | G | G | G | G | G | G | G | T | G | G | Os07g0412100 |
| unique | chr07_12920120 | Os07g0412100 | A/G | 7 | 12920120 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | A | A | A | G | A | A | A | A | A | A | A | A | A | Os07g0412100 |
| unique | chr07_12920495 | Os07g0412100 | C/A | 7 | 12920495 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os07g0412100 |
| unique | chr07_12922857 | Os07g0412100 | C/T | 7 | 12922857 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | T | C | C | C | C | Os07g0412100 |
| unique | chr07_12922864 | Os07g0412100 | G/T | 7 | 12922864 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | G | G | G | G | G | G | G | G | T | G | G | G | G | Os07g0412100 |
| unique | chr07_12923615 | Os07g0412100 | C/T | 7 | 12923615 | intron_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | C | C | C | C | C | C | C | C | T | C | C | C | C | Os07g0412100 |
| unique | chr07_12924116 | Os07g0412100 | G/A | 7 | 12924116 | 5_prime_UTR_variant | starch synthases-amylose | OsGBSSII | Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).;Granule-bound starch synthase 2, Starch biosynthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os07g0412100 |
| unique | chr07_7985144 | Os07g0243200 | G/A | 7 | 7985144 | intron_variant | AGPASE | OsAGPL4 | Plastidic large subunit of ADP-glucose pyrophosphorylase (AGP), Starch synthesis in rice pollen | G | G | G | A | G | G | G | G | G | G | G | G | G | Os07g0243200 |
| unique | chr07_7985350 | Os07g0243200 | T/C | 7 | 7985350 | intron_variant | AGPASE | OsAGPL4 | Plastidic large subunit of ADP-glucose pyrophosphorylase (AGP), Starch synthesis in rice pollen | T | T | T | C | T | T | T | T | T | T | T | T | T | Os07g0243200 |
| unique | chr07_7986905 | Os07g0243200 | G/T | 7 | 7986905 | intron_variant | AGPASE | OsAGPL4 | Plastidic large subunit of ADP-glucose pyrophosphorylase (AGP), Starch synthesis in rice pollen | G | G | G | T | G | G | G | G | G | G | G | G | G | Os07g0243200 |
| unique | chr08_15668803 | Os08g0345800 | T/G | 8 | 15668803 | intron_variant | AGPASE | OsAGPS2 | Cytosolic ADP-glucose pyrophosphorylase small subunit 2b, Starch synthesis in the middle to late stage of developing endosperm;Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a, Starch synthesis in the leaf;Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. | T | T | T | T | T | T | T | T | G | T | T | T | T | Os08g0345800 |
| unique | chr08_15668841 | Os08g0345800 | G/A | 8 | 15668841 | intron_variant | AGPASE | OsAGPS2 | Cytosolic ADP-glucose pyrophosphorylase small subunit 2b, Starch synthesis in the middle to late stage of developing endosperm;Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a, Starch synthesis in the leaf;Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. | G | G | G | G | A | G | G | G | G | G | G | G | G | Os08g0345800 |
| unique | chr08_15671252 | Os08g0345800 | G/A | 8 | 15671252 | intron_variant | AGPASE | OsAGPS2 | Cytosolic ADP-glucose pyrophosphorylase small subunit 2b, Starch synthesis in the middle to late stage of developing endosperm;Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a, Starch synthesis in the leaf;Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. | G | G | G | G | G | G | G | G | A | G | G | G | G | Os08g0345800 |
| unique | chr08_15671378 | Os08g0345800 | G/T | 8 | 15671378 | intron_variant | AGPASE | OsAGPS2 | Cytosolic ADP-glucose pyrophosphorylase small subunit 2b, Starch synthesis in the middle to late stage of developing endosperm;Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a, Starch synthesis in the leaf;Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. | G | G | G | G | T | G | G | G | G | G | G | G | G | Os08g0345800 |
| unique | chr08_15671470 | Os08g0345800 | T/C | 8 | 15671470 | intron_variant | AGPASE | OsAGPS2 | Cytosolic ADP-glucose pyrophosphorylase small subunit 2b, Starch synthesis in the middle to late stage of developing endosperm;Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a, Starch synthesis in the leaf;Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. | T | T | T | T | C | T | T | T | T | T | T | T | T | Os08g0345800 |
| unique | chr08_25893832 | Os08g0520900 | C/A | 8 | 25893832 | synonymous_variant | starch debranching enzymes | OsISA1|OsPHS8 | Starch-debranching enzyme, Isoamylase 1, Amylopectin biosynthesis, Starch biosynthesis | C | C | C | C | C | C | C | C | C | C | A | C | C | Os08g0520900 |
| unique | chr08_25897547 | Os08g0520900 | A/T | 8 | 25897547 | intron_variant | starch debranching enzymes | OsISA1|OsPHS8 | Starch-debranching enzyme, Isoamylase 1, Amylopectin biosynthesis, Starch biosynthesis | A | A | A | A | A | A | A | A | A | A | T | A | A | Os08g0520900 |
| unique | chr08_25900302 | Os08g0520900 | C/A | 8 | 25900302 | missense_variant | starch debranching enzymes | OsISA1|OsPHS8 | Starch-debranching enzyme, Isoamylase 1, Amylopectin biosynthesis, Starch biosynthesis | C | C | C | A | C | C | C | C | C | C | C | C | C | Os08g0520900 |
| unique | chr08_5139856 | Os08g0187800 | C/T | 8 | 5139856 | 5_prime_UTR_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | C | C | C | C | T | C | C | C | C | C | C | C | C | Os08g0187800 |
| unique | chr08_5140826 | Os08g0187800 | C/G | 8 | 5140826 | synonymous_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | C | C | C | G | C | C | C | C | C | C | C | C | C | Os08g0187800 |
| unique | chr08_5141603 | Os08g0187800 | G/A | 8 | 5141603 | intron_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os08g0187800 |
| unique | chr08_5142324 | Os08g0187800 | C/T | 8 | 5142324 | intron_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | C | C | T | C | C | C | C | C | C | C | C | C | C | Os08g0187800 |
| unique | chr08_5142911 | Os08g0187800 | G/T | 8 | 5142911 | intron_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | G | G | G | T | G | G | G | G | G | G | G | G | G | Os08g0187800 |
| unique | chr08_5142961 | Os08g0187800 | A/G | 8 | 5142961 | intron_variant | GPT1 | OsGPT | Glucose 6-phosphate/phosphate translocator, Starch biosynthesis | A | A | G | A | A | A | A | A | A | A | A | A | A | Os08g0187800 |
| unique | chr08_5355192 | Os08g0191433 | G/A | 8 | 5355192 | missense_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | G | G | G | G | A | G | G | G | G | G | G | G | G | Os08g0191433 |
| unique | chr08_5355504 | Os08g0191433 | A/T | 8 | 5355504 | missense_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | A | A | A | T | A | A | A | A | A | A | A | A | A | Os08g0191433 |
| unique | chr08_5357168 | Os08g0191433 | G/A | 8 | 5357168 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os08g0191433 |
| unique | chr08_5357211 | Os08g0191433 | T/G | 8 | 5357211 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | T | T | T | G | T | T | T | T | T | T | T | T | T | Os08g0191433 |
| unique | chr08_5357435 | Os08g0191433 | G/A | 8 | 5357435 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os08g0191433 |
| unique | chr08_5358266 | Os08g0191433 | T/C | 8 | 5358266 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | T | T | T | C | T | T | T | T | T | T | T | T | T | Os08g0191433 |
| unique | chr08_5358481 | Os08g0191433 | G/A | 8 | 5358481 | synonymous_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os08g0191433 |
| unique | chr08_5358950 | Os08g0191433 | C/T | 8 | 5358950 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | T | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359093 | Os08g0191433 | C/A | 8 | 5359093 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | A | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359347 | Os08g0191433 | C/T | 8 | 5359347 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | T | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359464 | Os08g0191433 | C/T | 8 | 5359464 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | C | T | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359476 | Os08g0191433 | A/T | 8 | 5359476 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | A | A | A | T | A | A | A | A | A | A | A | A | A | Os08g0191433 |
| unique | chr08_5359524 | Os08g0191433 | C/A | 8 | 5359524 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | A | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359613 | Os08g0191433 | C/T | 8 | 5359613 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | T | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5359625 | Os08g0191433 | G/A | 8 | 5359625 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | G | G | G | A | G | G | G | G | G | G | G | G | G | Os08g0191433 |
| unique | chr08_5361919 | Os08g0191433 | C/T | 8 | 5361919 | intron_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | C | T | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr08_5362556 | Os08g0191433 | C/T | 8 | 5362556 | synonymous_variant | starch synthases | OsSSIIIa|Flo5 | Starch synthase, Starch biosynthesis;Starch synthase, Starch biosynthesis, Amylopectin synthesis | C | C | C | T | C | C | C | C | C | C | C | C | C | Os08g0191433 |
| unique | chr09_17859458 | Os09g0469400 | C/A | 9 | 17859458 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | C | C | C | C | C | C | C | C | C | A | C | C | C | Os09g0469400 |
| unique | chr09_17859632 | Os09g0469400 | T/C | 9 | 17859632 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | T | T | T | T | C | T | T | T | T | T | T | T | T | Os09g0469400 |
| unique | chr09_17859879 | Os09g0469400 | C/T | 9 | 17859879 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | C | T | C | C | C | C | C | C | C | C | C | C | C | Os09g0469400 |
| unique | chr09_17861808 | Os09g0469400 | C/A | 9 | 17861808 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | C | C | C | C | C | C | C | C | C | C | A | C | C | Os09g0469400 |
| unique | chr09_17861817 | Os09g0469400 | T/G | 9 | 17861817 | intron_variant | starch debranching enzymes | ISA3 | Similar to isoamylase-type starch debranching enzyme ISO3. | T | T | T | T | T | T | T | T | T | T | G | T | T | Os09g0469400 |
| unique | chr09_7245449 | Os09g0298200 | C/T | 9 | 7245449 | 3_prime_UTR_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | C | C | C | C | T | C | C | C | C | C | C | C | C | Os09g0298200 |
| unique | chr09_7245651 | Os09g0298200 | A/G | 9 | 7245651 | 3_prime_UTR_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | A | A | A | A | A | A | A | A | A | A | A | A | G | Os09g0298200 |
| unique | chr09_7245661 | Os09g0298200 | G/A | 9 | 7245661 | 3_prime_UTR_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | G | G | G | G | G | G | G | G | G | G | G | G | A | Os09g0298200 |
| unique | chr09_7246223 | Os09g0298200 | T/G | 9 | 7246223 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | T | T | T | T | T | T | T | T | T | T | T | T | G | Os09g0298200 |
| unique | chr09_7247864 | Os09g0298200 | C/T | 9 | 7247864 | missense_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | C | C | C | T | C | C | C | C | C | C | C | C | C | Os09g0298200 |
| unique | chr09_7248148 | Os09g0298200 | G/A | 9 | 7248148 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | G | G | G | G | G | G | G | G | G | G | G | G | A | Os09g0298200 |
| unique | chr09_7248165 | Os09g0298200 | C/A | 9 | 7248165 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | C | C | C | C | C | C | C | C | C | C | C | C | A | Os09g0298200 |
| unique | chr09_7248268 | Os09g0298200 | G/A | 9 | 7248268 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | G | G | G | G | G | G | G | G | G | G | G | G | A | Os09g0298200 |
| unique | chr09_7248274 | Os09g0298200 | A/C | 9 | 7248274 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | A | A | A | A | A | A | A | A | A | A | A | A | C | Os09g0298200 |
| unique | chr09_7248300 | Os09g0298200 | C/T | 9 | 7248300 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | C | C | C | C | C | C | C | C | C | C | C | C | T | Os09g0298200 |
| unique | chr09_7248341 | Os09g0298200 | G/T | 9 | 7248341 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | G | G | G | G | G | G | G | G | G | G | G | G | T | Os09g0298200 |
| unique | chr09_7248362 | Os09g0298200 | A/G | 9 | 7248362 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | A | A | A | A | A | A | A | A | A | A | A | A | G | Os09g0298200 |
| unique | chr09_7248367 | Os09g0298200 | A/T | 9 | 7248367 | intron_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | A | A | A | A | A | A | A | A | A | A | A | A | T | Os09g0298200 |
| unique | chr09_7249812 | Os09g0298200 | G/A | 9 | 7249812 | 5_prime_UTR_variant | AGPASE | OsAGPS1 | Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1, Starch synthesis in the early stage of developing endosperm;Similar to Brittle 2. | G | A | G | G | G | G | G | G | G | G | G | G | G | Os09g0298200 |
| unique | chr10_6170090 | Os10g0189100 | T/G | 10 | 6170090 | intron_variant | starch synthases | OspPGM | Plastidic phosphoglucomutase, Starch synthesis in rice pollen | T | T | T | T | T | T | T | T | G | T | T | T | T | Os10g0189100 |
| SNP type | SNP ID | Chr | SNP effect | Category |